| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2135 |
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| Symbol | |
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| ID | 6162919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2336928 |
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| End bp | 2338820 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664904 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001791167 |
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| Protein GI | 171058818 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00180328 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGTTTGCAG CTTTCGAGCG GCTGGTCGAC CCCTATCCCG TCACCCGGCC GACGCCGCCA
CCGCCGCGGT TCTTCGCCTT CATCTGGGCC TGCAGCGAAG GCACGCGGCG CTACATCCTG
GGCATGACGA TCTGCACCGC GCTGATCGGC GCGTTCGAGG CACTGCTGTT CGCGATGCTC
GGCGAGGTGG TCGACTGGCT GGGCCAGATC CCGCCAGCGC GGATCTGGAG CGATGCGGGG
GGGCAGTTGC TGCTGCTGGT GGGCGTGATC GCGGCCAGCC CGCTGGTCGT GATGCTGCAG
ACGCTGCTCA AGCACCAGAC GCTGTCGGGC AACTTCCCGA TGCGCCTGCG CTGGAACTTC
CACCGCATGA TGCTGGCGCA GAGCATGTCG TTCTATCAGG ACGAATTGGC CGGCCGGGTG
GCCGCCAAGG TGATGCAGTC GGCGCTGGCG GTGCGCGACG CGATCCTGAT CGTGACCGAC
ATCCTGGTGT TCGTGGTCAT CTACTTCGTC ACCATGACCG CGGTGGTGGG CCACTTCAAC
CGCTGGATGC TGCTGCCGTT CGCGGCCTGG CTGGCGGCCT ACATCGTGGT GGTGGTTTTC
TTCGTGCCGC GGCTGGCGCG GGTGGCCAAG GCGCAGGCCG ATGCGCGCTC GCTGATGACC
GGGCGCATCA CCGACGCGTA CACCAACATC ACCACCGTCA AGCTGTTCTC GCACGCCCAG
CGCGAGGCCG GTTACGCGCG CTCGGCGATG CAGGAGTTCC TGCGCACGGT GCACGGACAG
ATGCGGCTGG TGAGCGGTTT CGAGGTCTGC ATCCACTCGC TGAGCATGCT GTTCATCCTG
GGCACGGCGG GTTCGGCGCT GTGGCTGTGG AGCCAGGGCC AGGTCGGCAT CGGCGCGGTC
GCCGCGGCCA CCGCGATGGC GTTGCGCCTG AACGGAATCT CGCACTGGGT GATGTGGGAG
GTGGCGTCGC TGTTCGAGCA CATCGGCACG GTGCAGGACG GGCTGGCGAC GCTGTCGCGG
CCGAACGCCG TGACCGACCG GGACGACGCG AAGCCGCTGC AGGTCAGCCG CGGCGAGATC
CGCTTCGACA ACGTCGATTT CGCCTACGGC GGCAACGGCG CGGCGGTGGT CGAGGGTCTG
AACCTGCACA TCCGACCGGG CGAGAAGATC GGCCTGGTCG GGCGCTCGGG CGCCGGCAAG
TCGACCATCG TCAACCTGCT GCTGCGCTTC TACGACCTGC GCTCGGGCCA GGTGCTGATC
GACGGCCAGG ACATCGCGCA CGTCACGCAG GACAGCCTGC GCGCGCAGGT CGGCATGGTG
ACGCAGGACA CCTCGCTGCT GCACCGCTCG GTGCGCGACA ACATCCTCTA CGGCCGTCCT
GACGCCACCG ACGAGCAGAT GATCAGTGCC GCCAAACGCG CCCAGGCGCA CGAGTTCGTG
CAGGGGCTGA CCGATCCGAA GGGCCGCACC GCCTACGACG CCCATGTGGG CGAACGCGGC
GTCAAGCTCT CGGGCGGGCA GCGCCAGCGC GTCGCCATCG CCCGCGTGAT GCTGAAAGAT
GCGCCGATCC TGCTGCTCGA CGAGGCCACC AGCGCGCTCG ATTCCGAGGT CGAGGCCGCC
ATCCAGACCA CGCTGTATCA GCTGATGGAG GGCAAGACGG TGGTGGCGAT CGCGCACCGG
CTGTCGACCA TCGCGGCGAT GGACCGGCTG ATCGTGCTCG ACCGCGGCCG CATCGTCGAG
GAGGGCGACC ACCGCAGCCT GCTGGCGATG GGCGGCCTGT ACGCGCGGCT GTGGGCGCAC
CAGAGCGGCG GTTTCCTGGG GGCCGATGAC GACGAGCCGG CCGCCACGGG TACCCGCCCG
CCGATCGCGG CCGAGCTGGT CGGCGCCAAG TGA
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| Protein sequence | MFAAFERLVD PYPVTRPTPP PPRFFAFIWA CSEGTRRYIL GMTICTALIG AFEALLFAML
GEVVDWLGQI PPARIWSDAG GQLLLLVGVI AASPLVVMLQ TLLKHQTLSG NFPMRLRWNF
HRMMLAQSMS FYQDELAGRV AAKVMQSALA VRDAILIVTD ILVFVVIYFV TMTAVVGHFN
RWMLLPFAAW LAAYIVVVVF FVPRLARVAK AQADARSLMT GRITDAYTNI TTVKLFSHAQ
REAGYARSAM QEFLRTVHGQ MRLVSGFEVC IHSLSMLFIL GTAGSALWLW SQGQVGIGAV
AAATAMALRL NGISHWVMWE VASLFEHIGT VQDGLATLSR PNAVTDRDDA KPLQVSRGEI
RFDNVDFAYG GNGAAVVEGL NLHIRPGEKI GLVGRSGAGK STIVNLLLRF YDLRSGQVLI
DGQDIAHVTQ DSLRAQVGMV TQDTSLLHRS VRDNILYGRP DATDEQMISA AKRAQAHEFV
QGLTDPKGRT AYDAHVGERG VKLSGGQRQR VAIARVMLKD APILLLDEAT SALDSEVEAA
IQTTLYQLME GKTVVAIAHR LSTIAAMDRL IVLDRGRIVE EGDHRSLLAM GGLYARLWAH
QSGGFLGADD DEPAATGTRP PIAAELVGAK
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