| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2087 |
|---|
| Symbol | |
|---|
| ID | 6162062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2276302 |
|---|
| End bp | 2278062 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641664856 |
|---|
| Product | poly(R)-hydroxyalkanoic acid synthase, class I |
|---|
| Protein accession | YP_001791119 |
|---|
| Protein GI | 171058770 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3243] Poly(3-hydroxyalkanoate) synthetase |
|---|
| TIGRFAM ID | [TIGR01838] poly(R)-hydroxyalkanoic acid synthase, class I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAT TCCTCGGGCA GATGCCTGGG TTGGCCGGCC TTGCGGGCGG CACAAACCTC
GAAGAGAGTC TCAGGCAGAC CTTGGCGATG GGGGGCCTGG CTGATCTGGG CCGTGCAGGC
CAGCAGCTGG GTTCGTTGGG CAGCAGCCTG GGCGATTCGC TCAAGGGCTT CACGAAGCTG
CAGATCCCGC CGGCCGAACT GTCGCGCATC CAGGCCGAAT ACGTGCAGCA GGCCGCGCAA
CTCTGGAACA GCGCGCTCAC CGGAGCCGCC TCGCCGGCCC CGGGCGATCG GCGTTTCGCG
TCGGCCGAAT GGTCGTCGAG CCCGATGTCG GGCTTCACCG CGGCGCTCTA CCTGCTCAAT
GCGCGCACGC TGATGCAGAT GGCCGAATCG GTCGACGGCG ATGCCAAGAC CCGCGCCCGC
GTGCGCTTCG CGGTCCAGCA GTGGATCGAT GCGGCGGCGC CGTCCAACTA CCTGGCGCTC
AACCCGGACG CGCAGAAGAA GGCGCTCGAG ACCAAGGGCG AGAGCATCGC GCTGGGCATG
CAGCACCTGA TCGCCGACAT GCGCCAGGGC CATGTCTCGC AGACCGACGA GAGCCTGTTC
GAGGTCGGCC GCAACGTCGC CACCACCGAA GGCGCGGTGG TGTTCGAGAA CGAGCTCTTC
CAGCTGCTCG AATACAAGCC GCTGACCGAG CAGGTCCACG AGCGGCCGAT GCTGTTCGTG
CCGCCGTGCA TCAACAAGTA CTACATCCTC GACCTGCAGC CCGACAACTC GGTGATCCGC
TACACCGTGG CGCAAGGTCA CCGCGTGTTC GTGCTGAGCT GGCGCAACCC CGACGAGAGC
CTGGCGGCCA AGACCTGGGA CGACTACACC GAAGACGCCG TCATCAAGGC GATCCGCGTG
GTGCAGGAAA TCGGCGGCAC GGACACCATC GACATGCTGG GCTTCTGCGT CGGCGGCACG
CTGCTGACCT GCGCGCTGGC GGTGCTGGCC GCACGCGGCG AGCAGCCGGC AGCCAGCGTC
ACGCTGCTGA CGAGCTTCCT CGACTTCAGC GCCACCGGCA TCCTCGACCT GTTCATCGAC
GAGGCCTCGG TGCGGCTGCG CGAGATCACC CTGGGCGCCG ACGCGCCCAA GGGCCCCGGG
CTGCTCAAGG GCAAGGAACT CGCCGCGACC TTCAGCTTCC TGCGCCCGAA CGACCTGGTC
TGGAACTACG TCGTCGGCAA CTACCTGAAG GGCGAGACGC CGCCGCCGTT CGACCTGCTG
TACTGGAACT CCGACAGCAC CAACCTGCCG GGTCCGATGT ACTGCTGGTA CCTGCGCAAC
ACCTACCTCG AGGACAAGCT CAAGGTGCCG GGTGCGCTCA CGGTCTGCGG CGAGAAGGTC
GACCTCGGCA AGATCAAGGC GCCGTTCTAC CTGTACGCAT CGCGCGAAGA CCACATCGTG
CCGTGGGACT CGTCGTACCT GAACACCCGG ATCCTGAACG GCAAGCTGCG CTTCGTCATG
GGCGCCTCGG GCCACATTGC CGGCGTCATC AATCCGCCGA CCAAGAAGAA GCGCAGCCAC
TGGATCAACG ACAAGCTGCC CGAGACCGCG CAAGCCTGGC TTGACGGCGC CACCGAGCAT
GCCGGCAGCT GGTGGCCGGA TTGGTCCGAA TGGCTGAAGG GACACGCCGG CAAGCTCAAG
GCCGCGCCCA AGACCTACGG CAACCGCAAG TACAAGCCGA TCGAGCCGGC ACCCGGTCGT
TACGTCAAGC AGAAAGTCTG A
|
|---|
| Protein sequence | MSAFLGQMPG LAGLAGGTNL EESLRQTLAM GGLADLGRAG QQLGSLGSSL GDSLKGFTKL
QIPPAELSRI QAEYVQQAAQ LWNSALTGAA SPAPGDRRFA SAEWSSSPMS GFTAALYLLN
ARTLMQMAES VDGDAKTRAR VRFAVQQWID AAAPSNYLAL NPDAQKKALE TKGESIALGM
QHLIADMRQG HVSQTDESLF EVGRNVATTE GAVVFENELF QLLEYKPLTE QVHERPMLFV
PPCINKYYIL DLQPDNSVIR YTVAQGHRVF VLSWRNPDES LAAKTWDDYT EDAVIKAIRV
VQEIGGTDTI DMLGFCVGGT LLTCALAVLA ARGEQPAASV TLLTSFLDFS ATGILDLFID
EASVRLREIT LGADAPKGPG LLKGKELAAT FSFLRPNDLV WNYVVGNYLK GETPPPFDLL
YWNSDSTNLP GPMYCWYLRN TYLEDKLKVP GALTVCGEKV DLGKIKAPFY LYASREDHIV
PWDSSYLNTR ILNGKLRFVM GASGHIAGVI NPPTKKKRSH WINDKLPETA QAWLDGATEH
AGSWWPDWSE WLKGHAGKLK AAPKTYGNRK YKPIEPAPGR YVKQKV
|
|---|
| |