| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2062 |
|---|
| Symbol | |
|---|
| ID | 6160995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2240755 |
|---|
| End bp | 2242065 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641664831 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001791094 |
|---|
| Protein GI | 171058745 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.020715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGG CAGCGGGCGC GAGCGCCGAA ACGACCGGGC CGACCGGCAG GAAACGGGCC
GCGGCCATGC CCTTCATCAT GCTGACGGTG CTGCTGGACA TGATCGCCAT CGGGCTGATC
ATTCCGGTGC TGCCGCCGCT GGTGGGCACC TTCACCGGCT CGCAGGCCGA CCACGCCTTC
TGGTATGGCG TGGTCACCTT CTCGTTCGGC CTGGCCAACT TCTTCGGCGC GCCCATCCTG
GGTGCGCTGT CGGACCAGTA CGGCCGCCGC CCGGTGCTGC TGGTCGGTCT GGCCGGGCTG
GCGTGCAGCT TCTTCGTCAC CGCGCTGGCC ACGGCCTTGT GGATGCTGGT GGCGGTGCGC
GTGTTCAGCG GCGCGCTGCA GGCCAACGCG GCGGTGGCGC AGGCCTACGT CGCCGACATC
AGCACGGCGG CCGATCGCGG CAAGCGTTTC GGCATGCTGG GCGCGATGTT CGGCATGGGC
TTCGTGCTCG GTCCGGTGAT GGGTGGCCTG CTCGGCGGCA TCGACCTGCG ACTGCCGTTC
TTTGCAGCCG GCACGCTGGC GGTGCTCAAC ACGCTGTACG GCATCTTCGT GCTGCCCGAA
TCCCTGGCCG CCGATCGCCG CACGCCGATC AACTGGAAAC GCGCCAACCC GATCGCCTCG
TTCTCGCAGT TGCGCCAGCT GCACGGCGTG GGCATGCTGG TGGCGGTGAT CGGGCTGTCC
GGCCTGGCGC AGTTCATCCT GCACACCACC TGGGTGCTCT ACACCACCTT CAAGTTCGGC
TGGGGCCCGC AGGAAAACGG CTGGTCGCTG TTTGCGGTGG GTGCGATGTC GGTGCTGGTG
CAGGGTGGCC TGATCCGCGT GGCGCTCAAG CGCAGCACGC CGCAGCGCAT CGCCGTCATC
GGCCTGGTGT CGTCGTCGCT CAGCTACCTG CTGTGGGGCG CGGCCACCGA GGGCTGGATG
ATGTACGCAG TGATCGGCTT GAACGTCTTC GGCTTCATGG TGCAGACCGC CATCCAGACC
ATCGTCTCCG GCGCCGCCGA CGAGCAGTCG CAAGGCCGCA CGCTCGGCGC CGTGGCGTCG
ATCAACAGCC TGACCGCGGT GGTCGCGCCG ATCATCGGCG CCGGCCTGCT CGGCATCGTC
TCGCACCTGC CGCGCGGCGA CTGGCGCATC GGCGCGCCGT TCTTCCTGTG CTCCGCGCTG
CAGCTGGTGG CGATGGTGCT GGCGCTGCGC CACTTCCGTC GCCATCCGGC GCACTCTTCC
ATTCCTACAC CCGGCACCGC GGCCGTCACA TCGGCCGCCA CCGAGGCTTG A
|
|---|
| Protein sequence | MTEAAGASAE TTGPTGRKRA AAMPFIMLTV LLDMIAIGLI IPVLPPLVGT FTGSQADHAF
WYGVVTFSFG LANFFGAPIL GALSDQYGRR PVLLVGLAGL ACSFFVTALA TALWMLVAVR
VFSGALQANA AVAQAYVADI STAADRGKRF GMLGAMFGMG FVLGPVMGGL LGGIDLRLPF
FAAGTLAVLN TLYGIFVLPE SLAADRRTPI NWKRANPIAS FSQLRQLHGV GMLVAVIGLS
GLAQFILHTT WVLYTTFKFG WGPQENGWSL FAVGAMSVLV QGGLIRVALK RSTPQRIAVI
GLVSSSLSYL LWGAATEGWM MYAVIGLNVF GFMVQTAIQT IVSGAADEQS QGRTLGAVAS
INSLTAVVAP IIGAGLLGIV SHLPRGDWRI GAPFFLCSAL QLVAMVLALR HFRRHPAHSS
IPTPGTAAVT SAATEA
|
|---|
| |