Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2006 |
Symbol | |
ID | 6162367 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2173723 |
End bp | 2177190 |
Gene Length | 3468 bp |
Protein Length | 1155 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641664775 |
Product | transcription-repair coupling factor |
Protein accession | YP_001791038 |
Protein GI | 171058689 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.000316908 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCTGCTTC CGAACATCGC ACCCGGCAAA CGCTTTGCCG TTTCACGCCC GATCGGCTCC GCCGATGCGC TCTTGCTGGC CCGCTTCGCC CAGGCCCGGG TGGCCAGCCG GCAACTGCTG GCCGTGATCG TGGCCGAGCC CGCCGACGCC CAGCGGCTGC CCGACGAACT GGCTTTCTTT GCCCCTGAAC TGCGCGTGGC GGTGTTCCCC GACTGGGAAA CCCTGCCCTA CGACAGCTTC AGCCCGCACC AGGACCTGAT CTCCGAGCGC CTGGCCACGC TCTGGCGGGT GCGCTCGGGC GAGGTCGACG TGGTGCTGCT GCCCGCCACC ACGGCGCTGA CCCGGCTGGC GCCGCCGTCG TTCCTGGCCG GCTACACCTT CCATTTCAAG CAGAAGCAGA AACTCGATGA CGCCGCGCTC AAGGCACAGC TGACGCTGGC GGGCTATCAG CACGTCAGCC AGGTGGTGTC GCCGGGCGAA TACGCCGTGC GCGGCAGCCT GATCGACCTG TTCCCGATGG GCTCGCTGGT GCCCTACCGG GTCGACCTGT TCGACAACGA GGTCGATTCG ATCCGCGTCT TCAACCCCGA CAGCCAGCGC AGCCTCTACC CGGTGCCCGA GGTGCGGCTG CTGCCCGGGC GCGAGTTCCC GATGGACGAC GCCGGGCGGC AGGCCTTCCG GGCCCGCTGG CGCGAAAAGA TGGACGGCGA CCCGAGCAAG GCGCGCATCT ACAAGGACAT GGCCTCGGGC ATCGCCACCG CCGGCATCGA GTACTACCTG CCGCTGTTCT TCGAGCAGCC GGCCACCTTC TTCGACTACC TCGGCGACGC CGCCGCGCTG GTGCTGCACG GCGAGGTCGA CGAGGCGCTG GCGCGTTTCT GGGGCGAAAC CCGCGAGCGC CACAAGTTCC TGCGCCACGA CCCCGAGCGG CCGGTGCTGC CGCCCGAGGA CATCTACCTG CGCCAGGAAG AATTCTTCGC GCGGTGCAAC CAGCACGCCC AGCTGTCGAT CCGCGGCAAC GACCCCGTCG AATGGGCCCG GCCGCTGCCC GACCTGAGCG TGATCCGCGG CGGCACCGAT CCGCTGCAGC GCCTGGAGCA GCAGCTCGAG AAGATCCGCA GCCAGAAGAA CCGGCTGCTG ATCGTGGCCG AAAGCGCCGG CCGGCGCGAG AGCCTGCTCG AACTGCTGCG CGACCACCGG CTGGAGCCGC CGCCGATCGA CGGCCTGTCG GCCTTCATCG CCAGCGACCA CCCGTACGCG ATCGCCACCG CGCCGCTGGC CGCCGGTTTC TTCTGGACCG ACGCGACGGC CGACTTCGGC ATCCAGTTCG TCACCGAAAC CGAACTCTTC GACGCCACGC CCACCGCACG CCGGCGCCGC AAGCAGGAGC AGACCAGCGA CGTCGAGGCG CTGATCAAGG ACCTGTCGGA GCTGAAGGTC GGCGACCCGG TGGTGCACGC CAACCACGGC ATCGGCCGCT ACCAGGGGCT GGTCAGCATC GACCTGGGCG AGGGGCCGAC CGAGTTCCTG TTCCTCGAAT ACGCCGACCA GGCCACGCTC TACGTGCCGG TGTCGCAGCT GCAGCTGATC AGCCGCTACA CCGGCGTCAG CGCCGAAGAG GCGCCGCTGC ACAAGCTCGG TTCCGGCCAG TGGGAAAAGG CCAAGCGCAA GGCGGCCGAG CAGGTGCGCG ACGCCGCCGC CGAGCTGCTG AATCTGTACG CGCGCCGCGC TTCGCGCGAA GGGTTTGCAT TCCGTTTCTC GCCGCAGGAT TACGAGGCGT TTGCGGCCAG CTTCGGCTTC GAGGAAACCG CCGACCAGAA CGCCGCGATC CACGCCGTCA TCCAGGACAT GATCAGCCCC AGACCGATGG ATCGGCTGGT CTGCGGCGAC GTCGGTTTCG GCAAGACCGA GGTGGCCTTG CGCGCCGCCT TCGTGGCGGT CACCGGCGGC AAGCAGGTGG CGCTGCTCGC GCCGACCACG CTGCTGGCCG AGCAGCACTA CCAGACGCTG GCCGACCGCT TCGCGCAGTG GCCGGTCAAG GTGGCCGAGA TCAGCCGCTT CCGCTCGACC AAGGAGGTCA AGGCCACGCT CGACGGCCTG GCCGCCGGCA CGGTCGACAT CGTGGTGGGC ACGCACAAGC TGCTGAGCCC GGACTCGAAG TTCAAGAACC TGGGCCTCCT GATCATCGAC GAGGAACACC GTTTCGGCGT GCGCCACAAG GAGCAGATGA AGGCGCTGCG CGCCGAGGTC GACGTGCTCA CGCTCACCGC CACGCCGATC CCGCGCACGC TGGGCATGGC GCTCGAAGGG CTGCGAGATC TGAGCGTGAT CGCCACCGCG CCGCAGCGGC GCCTCGCGAT CAAGACCTTC GTGCGCAACG AGACCGGCGG CACGATCCGC GAGGCCGTGA TGCGCGAGTT GAAGCGCGGC GGCCAGGTCT ACTTCCTGCA CAACGAGGTC GACACGATCG AGAACCGGCG CCAGAAGCTC GAGGAAATGC TGCCCGAGGC GCGCATCGCG GTCGCCCACG GCCAGATGCC CGAGCGCGAG CTCGAGCGCG TGATGCGCGA CTTCGTGGCC CAGCGCCACA ACGTGCTGCT GTGCTCGACC ATCATCGAGA CCGGCATCGA CGTGCCGAGC GCCAACACCA TCGTCATCAG CCGCGCCGAC AAGTTCGGCC TGGCGCAGCT GCACCAGCTG CGCGGGCGCG TCGGTCGCAG CCACCACCAG GCCTACGCCT ACCTGCTGGT GCCCGACACC GAGGGCCTGA CCAAGCAGGC GCAGCAGCGC CTGGACGCCA TCCAGGCGAT GGAGGAACTG GGTTCGGGCT TCTACCTGGC GATGCACGAC CTGGAGATCC GCGGCGCCGG CGAGGTGCTG GGCGACAACC AGAGCGGCAA CATGATGGAG GTCGGCTTCC AGCTCTACAA CGAGATGCTG GCCGAGGCGG TGCGGGCGAT GAAGGCCGGC GAGGAGCCCG ACCTGCTGTC ACCCACCGGC TTCTTCGGCG CCGCCACCGA GGTCAACCTG CACGCCCCCG CGCTGCTGCC CGACAGCTAC TGCGGCGACG TGCACGTGCG CCTGAACCTC TACAAGCGCC TGGCCACGGT CGACAGGCTC GACAAGATCG ACAGCCTGCT CGAGGAGATC GTCGACCGCT TCGGCAAGCT GCCCGCCCAG GGCCAGACGC TGTTCGACCT GCACCGCCTG CGGGTGCAGG CGCGGCCCTA CGGCGTGGTC AAGATCGACG CGGGCCCGGC GGTGATGAAC ATCCATTTCA AGCCGAACCC GCCGATCGAT CCGATGCGCA TCATCGAGCT GGTGCAGAAG AACCGCAACG TCAAGCTCGC CGGCAACGAC AAGCTGCGCA TCGACCGGGC CTACCCCGAC GCCAAGGACC GGGCGCAGTA CGTGCGCGAC GTGCTGCGCG CACTCGGCCA GCCGCAGGCC AAGGCGGCCG CCACCTGA
|
Protein sequence | MLLPNIAPGK RFAVSRPIGS ADALLLARFA QARVASRQLL AVIVAEPADA QRLPDELAFF APELRVAVFP DWETLPYDSF SPHQDLISER LATLWRVRSG EVDVVLLPAT TALTRLAPPS FLAGYTFHFK QKQKLDDAAL KAQLTLAGYQ HVSQVVSPGE YAVRGSLIDL FPMGSLVPYR VDLFDNEVDS IRVFNPDSQR SLYPVPEVRL LPGREFPMDD AGRQAFRARW REKMDGDPSK ARIYKDMASG IATAGIEYYL PLFFEQPATF FDYLGDAAAL VLHGEVDEAL ARFWGETRER HKFLRHDPER PVLPPEDIYL RQEEFFARCN QHAQLSIRGN DPVEWARPLP DLSVIRGGTD PLQRLEQQLE KIRSQKNRLL IVAESAGRRE SLLELLRDHR LEPPPIDGLS AFIASDHPYA IATAPLAAGF FWTDATADFG IQFVTETELF DATPTARRRR KQEQTSDVEA LIKDLSELKV GDPVVHANHG IGRYQGLVSI DLGEGPTEFL FLEYADQATL YVPVSQLQLI SRYTGVSAEE APLHKLGSGQ WEKAKRKAAE QVRDAAAELL NLYARRASRE GFAFRFSPQD YEAFAASFGF EETADQNAAI HAVIQDMISP RPMDRLVCGD VGFGKTEVAL RAAFVAVTGG KQVALLAPTT LLAEQHYQTL ADRFAQWPVK VAEISRFRST KEVKATLDGL AAGTVDIVVG THKLLSPDSK FKNLGLLIID EEHRFGVRHK EQMKALRAEV DVLTLTATPI PRTLGMALEG LRDLSVIATA PQRRLAIKTF VRNETGGTIR EAVMRELKRG GQVYFLHNEV DTIENRRQKL EEMLPEARIA VAHGQMPERE LERVMRDFVA QRHNVLLCST IIETGIDVPS ANTIVISRAD KFGLAQLHQL RGRVGRSHHQ AYAYLLVPDT EGLTKQAQQR LDAIQAMEEL GSGFYLAMHD LEIRGAGEVL GDNQSGNMME VGFQLYNEML AEAVRAMKAG EEPDLLSPTG FFGAATEVNL HAPALLPDSY CGDVHVRLNL YKRLATVDRL DKIDSLLEEI VDRFGKLPAQ GQTLFDLHRL RVQARPYGVV KIDAGPAVMN IHFKPNPPID PMRIIELVQK NRNVKLAGND KLRIDRAYPD AKDRAQYVRD VLRALGQPQA KAAAT
|
| |