| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1996 |
|---|
| Symbol | |
|---|
| ID | 6163244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2163035 |
|---|
| End bp | 2163499 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641664765 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001791028 |
|---|
| Protein GI | 171058679 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2847] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.000000352963 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCC GCACCCTCAC CCTGCTCGCC GGCCTCGCGA TCACCGGCCT GGCACAAGCC
GAAGTCACCG TGGCCGAACC GTGGGTGCGT GCCACCGTGG CCCAGCAGAA GGCCACCGGC
GCCTTCATGA CGCTGACCTC GACCGGCGAT GCCCGCCTGA TCTCGGCCAG CTCGCCCGCT
GCCGGCGTGG TCGAGGTGCA CGAGATGGCG ATGGAAGGCG ACGTCATGAA GATGCGCGCC
GTGCCGGCCG TCAACCTGCC CGCCGGCAAG GCGGTCGACC TGAAGCCGGG TGGTTATCAC
ATCATGCTGA TGGGGCTCAA GCAGCCGCTC AAGGCCGGCG AGACGGTGTC CGTCACGCTG
GTCGTCGAAG GCAAGGACCA GAAGCGCGAG ACCGTCGAAG TGCAGGCACC GGTGCGCGCG
CTGGGCGGCA TGAAGATGGA GCACAAGATG GAACACAAGC ACTGA
|
|---|
| Protein sequence | MNIRTLTLLA GLAITGLAQA EVTVAEPWVR ATVAQQKATG AFMTLTSTGD ARLISASSPA
AGVVEVHEMA MEGDVMKMRA VPAVNLPAGK AVDLKPGGYH IMLMGLKQPL KAGETVSVTL
VVEGKDQKRE TVEVQAPVRA LGGMKMEHKM EHKH
|
|---|
| |