Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1941 |
Symbol | |
ID | 6162547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2105221 |
End bp | 2106336 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641664710 |
Product | protein of unknown function DUF395 YeeE/YedE |
Protein accession | YP_001790973 |
Protein GI | 171058624 |
COG category | [R] General function prediction only |
COG ID | [COG2391] Predicted transporter component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.368246 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGCCT CCGAGGCATC GAATCTGACG GCCCAGGTAC TCTGGGCCGT GTTTCTTTTG GCGCTGCTCT ACGGGGCGAT CGCCGAGCGC AGCCATTTCT GCACCATGGG CGCGGTCGCC GATGTCGTCA ACTTCGGCGA CTGGCGCCGG CTGCACATGT GGGCGCTGGC GGCCGGGGTC GTGACGATCG GATTCAACCT GATGGTGGCC GCCGGCTGGG TCAGCGCCGA CAAGACGCTG TACGGCGGCT CACGCTGGCA ATGGGCGTCG GCCCTGGTCG GCGGCGCACT GTTCGGCTTC GGCATGGTGC TGGCGTCGGG TTGCGGCAGC AAGAACCTGG TGCGGCTGGG CGGCGGCAAC CTCAAGGCGC TGGTAGTGCT GCTCGTGATG GGGCTTTCGG CCTGGATGAC GCTGCGCGGG CTGACCGCGA TGTGGCGTGT CGAGACAGTC GACCGCTGGG CCGTGTCACT GCCCGGCTCG CAGGACTTGC CGAGCCTGAT CGCCGCCGGC TACGGCGGAT CGACGCCCGA TGTCGCGCTG GTTGTCGGCA CCGTCGTCGG CACCGCCTTG CTGGCCTGGG CACTGTGGGC GCGACCGGGC CGTGACGCCG GACTGCTGCT GGGCGGCATC GGCATCGGCG CCGTGGTGCT GGCGGTCTGG TGGGTGTCCG GGCGCTTCGG TCATCTGGCC GAGCATCCCG AAACCCTCGA AGAAGCCTTT CTCGGCACCG CCAGCCGGCG CATGGAGGCA CTCAGTTTCG TGACGCCGGT GGCGCAAGGT CTCGAGTGGC TGATCTTCTA CTCCGATCAG GGCCGCCGGC TGAGCACCGG CGTGGTGGCG GTTTGTGGCC TGGTGGCCGG CTCCTGGCTG GTCAACATCC GGCAGAAGAG CTTCCGATGG GAAGGTTTCG GCGACTCCGC CGATACCGCT CGCCACCTGA TCGGCGCCAC GATGATGGGC ATCGGCGGCG TGACCGCCAT GGGCTGCACC ATCGGACAGG GCCTGAGCGG CCTGTCCACG CTCGGGCTGA CCAGCCTGGT CGCGGTGGCG GCGATCATTG CCGGGGCGGT CGCCGGATTG CGTTTCCTGA ACTGGCAGCT GGAGCGAGCC GCATGA
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Protein sequence | MQASEASNLT AQVLWAVFLL ALLYGAIAER SHFCTMGAVA DVVNFGDWRR LHMWALAAGV VTIGFNLMVA AGWVSADKTL YGGSRWQWAS ALVGGALFGF GMVLASGCGS KNLVRLGGGN LKALVVLLVM GLSAWMTLRG LTAMWRVETV DRWAVSLPGS QDLPSLIAAG YGGSTPDVAL VVGTVVGTAL LAWALWARPG RDAGLLLGGI GIGAVVLAVW WVSGRFGHLA EHPETLEEAF LGTASRRMEA LSFVTPVAQG LEWLIFYSDQ GRRLSTGVVA VCGLVAGSWL VNIRQKSFRW EGFGDSADTA RHLIGATMMG IGGVTAMGCT IGQGLSGLST LGLTSLVAVA AIIAGAVAGL RFLNWQLERA A
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