| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1937 |
|---|
| Symbol | |
|---|
| ID | 6163691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2099740 |
|---|
| End bp | 2100159 |
|---|
| Gene Length | 420 bp |
|---|
| Protein Length | 139 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641664703 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_001790969 |
|---|
| Protein GI | 171058620 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.218457 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACCG GTTCGTCCGA CTCGCCCGAC GAGGTGCTGT CGGTCATCAA CACCACGCCG
CTGGTCGACG TGATGCTGGT GCTGCTGATC ATCTTCCTGA TCACGATTCC AGTCGTCACG
CTGTCGGTGC CGGTCCAGTT GCCCAAGGAG CGCAACGAAC TGCGCCAGAG CCGGCCCGAG
AACATCGTGG TCTCGGTCGA CGCCAAGGGT GCGATCTTCT GGTTCGACAC CGAGGTGCGC
GACCCTGCGG CACTGGTCGA GCGACTCAAG GCGGTGGCCA CGCGCGATCC GCAGCCCGAG
GTGCACATCC GGGGCGACCT CGAGGCCGAC TACGAGTCGA TCGGCCGCGT CATCCAGGCC
TGCCAGCGCG CCGGCATCGC CCGGGTCTCG TTCATCACCG AGCCGCCCGC CAAGGGCTGA
|
|---|
| Protein sequence | MQTGSSDSPD EVLSVINTTP LVDVMLVLLI IFLITIPVVT LSVPVQLPKE RNELRQSRPE
NIVVSVDAKG AIFWFDTEVR DPAALVERLK AVATRDPQPE VHIRGDLEAD YESIGRVIQA
CQRAGIARVS FITEPPAKG
|
|---|
| |