| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1900 |
|---|
| Symbol | |
|---|
| ID | 6159835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2057905 |
|---|
| End bp | 2058492 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641664663 |
|---|
| Product | polyhydroxyalkonate synthesis repressor, PhaR |
|---|
| Protein accession | YP_001790932 |
|---|
| Protein GI | 171058583 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5394] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01848] polyhydroxyalkanoate synthesis repressor PhaR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0266708 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGCCA ATCGCCGCAC CGCCGAGCCC AGCGAGGGCC CCACTGACGG ACTGCGCGTG
CTCAAGAAAT ACCCGAACCG CCGGCTTTAC GACACCCGGA CCAGCAGCTA CATCACGCTG
GCCGATGTCA AGCAGATGGT GCTCGACTCC GAGAACTTCG AGATTCGTGA CGCCAAGTCG
GGCGACGAAC TCACGCGCAG CATCCTGCTG CAGATCATTC TCGAGGAAGA GTCGGCCGGC
GTGCCGATGT TCTCGACCGA GATGCTGGGC CAGATCATCC GCTTCTACGG CCACACGATG
CAGGGCCTGA TGGGCGCCTA CCTCGAGAAG AACCTGCAGG CGTTCATCGA CATGCAGAAG
CGCTTCGCCG AGCAGACCGG CGGGCTCTAT GAGGGCAAGG CGTTCAATGC CGATGCCTGG
TCGCAGTTCA TGTCGATGCA GGCGCCGGTG ATGCAGGGCT TCATGGGCAG CTACCTCGAA
CAGTCCAAGA GCGTGTTCGC GAAGATGCAG GAGCAGATGC AGAAGCAGGC CGAGAGCTTC
TTCCCCGGCA TGTCGGGGCT CACGCCGCCA CCGAGCAGCA AGGGTTGA
|
|---|
| Protein sequence | MPANRRTAEP SEGPTDGLRV LKKYPNRRLY DTRTSSYITL ADVKQMVLDS ENFEIRDAKS
GDELTRSILL QIILEEESAG VPMFSTEMLG QIIRFYGHTM QGLMGAYLEK NLQAFIDMQK
RFAEQTGGLY EGKAFNADAW SQFMSMQAPV MQGFMGSYLE QSKSVFAKMQ EQMQKQAESF
FPGMSGLTPP PSSKG
|
|---|
| |