| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1886 |
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| Symbol | |
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| ID | 6159913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2035612 |
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| End bp | 2037867 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641664648 |
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| Product | lysine decarboxylase |
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| Protein accession | YP_001790918 |
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| Protein GI | 171058569 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.105456 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCGTT TTCATTTCCC GATCGTCATC ATCGACGAGG ACTTCCGCAG CGAGAACACC
TCGGGGCTGG GCATCCGTGC GCTGGCCCAG GCCATCGAAA AAGAGGGCTT CGAGGTGCTG
GGTGCCACCA GCTACGGCGA CCTGAGCCAG TTCGCGCAGC AGCAAAGCCG CGCCGGCGCC
TTCATCCTGT CGATCGACGA CGAGGAGTTC ACGCCCGGCC CCGAGCTCGA CCCGGCGGTG
CTGTCGCTGC GCAAGTTCAT CGAGGAGATC CGGTTCCGCA ACACCGACAT CCCGATCTAC
ATCTACGGCG AGACGCGCAC CTCGCAGCAC ATCCCCAACG ACATCCTGCG CGAGCTGCAC
GGCTTCATCC ACATGTTCGA GGACACGCCG GAGTTCGTGG CGCGCCACAT CATCCGCGAG
TGCAAGAGCT ACCTCGACGG CCTGGCGCCG CCGTTCTTCA AGGAGCTGAT GGACTACGCG
CAGGACGGCT CCTACAGCTG GCACTGCCCG GGTCACTCGG GCGGCGTGGC GTTCCTGAAG
AGCCCGGTGG GCCAGATGTT CCACCAGTTC TTCGGCGAGA ACATGCTGCG CGCCGACGTC
TGCAACGCGG TCGAGGAACT CGGCCAGCTG CTCGACCACA CCGGCCCGGT GGGTGCGTCC
GAGCGCAATG CGGCGCGCAT CTTCAACGCC GACCACTGCT ACTTCGTGAC CAACGGCACC
AGCACGTCCA ACAAGATGGT CTGGCACCAC ACGGTGGCGC CCGACGACAT CGTGGTGGTC
GACCGCAACT GCCACAAGTC GATCCTGCAC TCGATCATCA TGACCGGCGC GGTGCCGGTC
TTCATGACGC CCACGCGCAA CCACTACGGC ATCATCGGCC CGATCCCCGA GAGCGAGTTC
AGCCGCGAGG CGATCGAGCG CAAGATCGCC GCCAATCCGC TGCTGGCCGG CGTGGACACC
TCGCAGATCA AGCCGCGCAT CATGACGCTG ACGCAGAGCA CCTACGACGG CGTGCTCTAC
AACACCGAGA CCATCAAGGG CATGGTCGAC GGCTGGATCG ACACCCTGCA TTTCGACGAG
GCCTGGCTGC CGCACGCGGC CTTCCACAAG TTCTACGGCA GCTTCCACGC GATGGGCAAG
AACCGGCCGC GCCCGAAGGA GGCGATCGTC TACGCCACCC AGTCGACCCA CAAGCTGCTG
GCCGGCATCA GCCAGGCCTC GCAGGTGCTG GTGCAGGACT CGCAGACGCG CCAGCTCGAC
CGCCACCTCT TCAACGAGGC CTACCTGATG CACACCAGCA CCTCGCCGCA GTACGCGATC
ATCGCGTCGT GCGACGTGGC CGCGGCCATG ATGGACCCGC CCGGCGGCAC CGCGCTGGTC
GAGGAAAGCA TCAAGGAGGC GCTCGACTTC CGCCGCGCCA TGCGCAAGGT CGAGGACGAG
TTCGGCCACG ACTGGTGGTT CAAGGTCTGG GGCCCGCCGG CGCTGGCCGG TGACGGCATC
GGCCGCGCCG ACGGCTGGAT CCTGCAGGCC AACGAGCAGT GGCACGGCTT CGGCGACCTG
GCCGACGGCT TCAACATGCT CGACCCGATC AAGTCGACCA TCATCACGCC GGGGCTGAAC
ATGTCGGGCG AGTTCGCCAA GACCGGCATC CCGGCGGCGA TCGTCACCAA GTTCCTGGCC
GAGCACGGCG TGGTGGTCGA GAAGACCGGG CTCTACAGCT TCTTCATCAT GTTCACCATC
GGCATCACCA AGGGCCGCTG GAACACCCTG CTGACGGCGC TGCAGCAGTT CAAGGACGAC
TACGACCGCA ACCAGCCGCT GTGGCGCGTG CTGCCCGAGT TCGTCGCCAA GTACCCGGTC
TACGAGCGCA TGGGCCTGCG CGACCTCTGC CAGGCCATCC ACGAGGCCTA CGCCGAGGGC
GACATCGCCC GCCTCACCAC CGAGATGTAC CTGTCCGACC TGCATCCGGC GATGAAGCCC
AGCGAGGCCT ACGCGCACAT CGCCCGGCGC AGGACCGAGC GGGTCGAGAT CGACCAGCTC
GAAGGCCGCA TCACCACCTC GCTGCTGACG CCGTACCCGC CGGGCATCCC GCTGCTGATC
CCCGGCGAGC GTTTCAACAA GAAGATCGTC GACTACCTGC GCTTCGCGCG CCGCTTCAAC
GACCGCTTCC CCGGTTTCCA CACCGACGTG CACGGCCTGG TCGAGCAGGA CATGGGCAAC
GGCGTGCGGC GCTACTACGT CGACTGCGTG GCGTAG
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| Protein sequence | MQRFHFPIVI IDEDFRSENT SGLGIRALAQ AIEKEGFEVL GATSYGDLSQ FAQQQSRAGA
FILSIDDEEF TPGPELDPAV LSLRKFIEEI RFRNTDIPIY IYGETRTSQH IPNDILRELH
GFIHMFEDTP EFVARHIIRE CKSYLDGLAP PFFKELMDYA QDGSYSWHCP GHSGGVAFLK
SPVGQMFHQF FGENMLRADV CNAVEELGQL LDHTGPVGAS ERNAARIFNA DHCYFVTNGT
STSNKMVWHH TVAPDDIVVV DRNCHKSILH SIIMTGAVPV FMTPTRNHYG IIGPIPESEF
SREAIERKIA ANPLLAGVDT SQIKPRIMTL TQSTYDGVLY NTETIKGMVD GWIDTLHFDE
AWLPHAAFHK FYGSFHAMGK NRPRPKEAIV YATQSTHKLL AGISQASQVL VQDSQTRQLD
RHLFNEAYLM HTSTSPQYAI IASCDVAAAM MDPPGGTALV EESIKEALDF RRAMRKVEDE
FGHDWWFKVW GPPALAGDGI GRADGWILQA NEQWHGFGDL ADGFNMLDPI KSTIITPGLN
MSGEFAKTGI PAAIVTKFLA EHGVVVEKTG LYSFFIMFTI GITKGRWNTL LTALQQFKDD
YDRNQPLWRV LPEFVAKYPV YERMGLRDLC QAIHEAYAEG DIARLTTEMY LSDLHPAMKP
SEAYAHIARR RTERVEIDQL EGRITTSLLT PYPPGIPLLI PGERFNKKIV DYLRFARRFN
DRFPGFHTDV HGLVEQDMGN GVRRYYVDCV A
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