Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1826 |
Symbol | |
ID | 6163933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1974550 |
End bp | 1976721 |
Gene Length | 2172 bp |
Protein Length | 723 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641664588 |
Product | TonB-dependent receptor |
Protein accession | YP_001790858 |
Protein GI | 171058509 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0185611 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTGCAG CTTCGACCTC CTGTTTCACC TCGCGTCCTT CGGCGCTGGC AGCGGCCTGC CTGTGCGCGC TCGCCGCCCT TGCTGCGCCG GCATCGGCGC AAGTCGGCGC CGGCCTCGAG CCGGTGATCA TCACCGGCAG CACCCGCGAG CAGAAGCTGG TCGACGCGCC CTACGCCATC AACGCGGTCG GCGCCGAGGC GCTGCGCAGC GCCGGGCCGA TGGTCAACCT GTCGGAGGCG CTGGCCTCGG TGCCCGGCCT GGTGGTGGCC AACCGCAACA ACTACGCGCA GGACCTGCAG ATCAGCTCGC GCGGCTTCGG CGCCCGCGCC GGTTTCGGCG TGCGCGGCAT GCGGCTGTAC GCCGACGGCA TCCCCGCCAC CATGCCCGAC GGCCAAGGCC AGGTGGCGCA TTTCGACCTC GCCGGCGCGG ATCGCGTCGA GGTGCTGCGC GGGCCGTTTT CGGCGCTGTA CGGCAACAGC TCGGGCGGCG TGATCGCGGC CTATTCGAAG CCGGTGCGCG AGCGCAACTT CCAGGTCGGC ATCGACGCCG GCAGCTTCGG CCTGCGCCAG CAGCGGGTGT CGGTCGAGTC GCCGTTCGAC GGCGGTTTTT CGATCGCCGC CAACTTCAGC AATTTCGACA TCGACGGCTT TCGCCCGAAC AGCGATGCCG ACCGCCGGCT GGCCAACATC CGCCTGGCCT GGGTCGGCGA GGACGACCAC GTCACGCTCG CGATCAGCGA CCAGCACCAG CGCGCCAACG ACCCGCTCGG CCTGAACCGC GCTCTGTTCA GCCAGAACCC CGACCAGACG GCTCTCGCGG CGACCAACTT CAGGACCCGC AAGACCATCG ACCAGACCCA GGCCGGCCTG AGCTGGCAGC ACCAGCTGGG CGGCGACAGC GCCTTGCAGT CGACCCAGGT CAGCGGCTAC CTGGGTCGGC GTTCGGTGTT CCAGATGCTG TCGACGCCGC GCGCGAACCA GCTGATCACC GCTGACCCAG GCAGTACCAC CCCGCCTAAC CCGAACAGTG CCGGCGGCGT GATCGACTTC GACCGCGACT ACGCCGGCGT CGACGGACGT CTGAGCTGGC GTCTAGGCGA GGCCGATCTG GTCACCGGCG TCAACGTCGA GCGCCTGCGC GACGCCCGCA AGGGCTACGA GAACTACAGA AGCGCCACCG ATCTGGGCGT GGTCGGCGAC CTGCGCCGCG ACGAGACCAA CCGCGCCACC ACCCGCGAGG CCTACGCCCA GCTCGAACAG CCGCTGGCCG AGCAGTGGCA GCTGATCGCC GGCGTCCGCA CCGGTCAGGT CGAGCTGTCG AACACCGACC ATTACGTCAA TCCGCCGACG AACCCGACCA ACCCGGACGA CAGCGGCTCG CTGAGCTTCC GCTACACCAA CCCGGTGCTC GGCCTGCGCT GGCAGGCGGC CCCGACGCTG ACGCTGCACG CCAGCGCCTC GCGCGGCTAC GAATCGCCCA CGCTGGGCGA AGTCGCCTAT CGCCCGGACG GCGCCACCGG CTTCAACGAC ACCCTGCAGG CCCAGACCAG CCGCCAGATC GAACTCGGCG CCAAGTGGCG GCCGACGCCC GACTACGCGA TCGACGCGGC GGTGTTCCGC ATCAGCACCG ACAACGAGAT CGGCGTCAAC GCCAATGTCA ACGGCCGCGG CACCTTCAAG AACGTCGGCC GGACGCTGCG GCAGGGGCTC GAGCTGTCGC AGCGCTGGCG TCACAGCCCG ACGCTGCGCG GCCAACTCGC GCTGACCGTG CTGGACGCGA GCTACCGCAG CGCCCCCATC GACGGCAACC AGATCGCCGG CACCCAGCCC GCCAGCCTGT TTGCCGAGAT CGCCTGGAAG ACCTGGCCGG GCGGCGAATG GGGCCTGGAG GTGCGCGCCC AGGGCCGCAC CGCCTTGAAC GATGCGAATC AGGACGCCCC CGGCACACCG GGCGGCGGCT TCGCGGCCGG CTGGGGCATC GCGAACCTGC GTTATCTGCA CGCCTGGGAC ATCGGCAGCG AGGCCAAGGT CGAACTGCTG GCGCGTGTCG ACAACCTGGC CGATCGCCGC TACGCCGGCA GCGTGATCGT GGCCGAGGCC AACCAGCGCT ACTTCGAGAC GGCACCCGGG CGCAACCACC TCGTGTCGCT GCGCTATCTG CGCAAGTTCT GA
|
Protein sequence | MTAASTSCFT SRPSALAAAC LCALAALAAP ASAQVGAGLE PVIITGSTRE QKLVDAPYAI NAVGAEALRS AGPMVNLSEA LASVPGLVVA NRNNYAQDLQ ISSRGFGARA GFGVRGMRLY ADGIPATMPD GQGQVAHFDL AGADRVEVLR GPFSALYGNS SGGVIAAYSK PVRERNFQVG IDAGSFGLRQ QRVSVESPFD GGFSIAANFS NFDIDGFRPN SDADRRLANI RLAWVGEDDH VTLAISDQHQ RANDPLGLNR ALFSQNPDQT ALAATNFRTR KTIDQTQAGL SWQHQLGGDS ALQSTQVSGY LGRRSVFQML STPRANQLIT ADPGSTTPPN PNSAGGVIDF DRDYAGVDGR LSWRLGEADL VTGVNVERLR DARKGYENYR SATDLGVVGD LRRDETNRAT TREAYAQLEQ PLAEQWQLIA GVRTGQVELS NTDHYVNPPT NPTNPDDSGS LSFRYTNPVL GLRWQAAPTL TLHASASRGY ESPTLGEVAY RPDGATGFND TLQAQTSRQI ELGAKWRPTP DYAIDAAVFR ISTDNEIGVN ANVNGRGTFK NVGRTLRQGL ELSQRWRHSP TLRGQLALTV LDASYRSAPI DGNQIAGTQP ASLFAEIAWK TWPGGEWGLE VRAQGRTALN DANQDAPGTP GGGFAAGWGI ANLRYLHAWD IGSEAKVELL ARVDNLADRR YAGSVIVAEA NQRYFETAPG RNHLVSLRYL RKF
|
| |