| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1823 |
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| Symbol | |
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| ID | 6163857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1969408 |
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| End bp | 1972617 |
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| Gene Length | 3210 bp |
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| Protein Length | 1069 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664585 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001790855 |
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| Protein GI | 171058506 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00515556 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGACTT TGCTGGTGCG CCTGGTGGGC AGGCTCAGCG TCGGCCGCAA GCTGATGCTG
ATCTATCTGC TCGACCTCAG CTCGGTGCTG TACGTGGCGG GCATCCTGAT CGACGAGAAG
TTCATCGCCA TCGACTTCGC GCGCAAGGAA CTCGCCGGCA GCGCCTACGT GCGGGTCGTG
GCCGATGCGC TGGTCGACGT GGCCGGTGCC GGGCAGCCGC CGTCGACGGC AGCGCCGGCG
CTGCCGACGG CCACCCACCT GCAGCGCCTG GCCGAACAGG CCCGTGCGCA GGACGCCGGC
ATGCGCAGCG CCGAGGTTTC GGCGCCGCTG GCCGACGCCA TCACGCGCTG GGCCGAACCC
GCCGCAGGCC GGCCGCGGGC CACGGTCGAC GAGGTGCTGC GCCGCGGCCA GGACCTGCTG
ACGCGGGTGG GCAACCAGTC GAACCTGATC CTCGACCCCG ATCTGGACAG CTACTACAGC
ATGTCGATCG TGGTCCTGCG CCTGCCCGAG CTGCTGCAGG TGGTGCACGG CATCGCCCAC
CACGCCGAAA CCGGGGTCGG CCGCGACGCA CGCAGCGTCT ACCTGGTGCT CGAAGGCCGG
CTCGATGCGA TCGCGCAAGG GCTCGAGTCC GACCACGCCG AGGCCTTTGC GGCCGGCAGC
CCGGCATTGA AGGCGGCGCT GTCGCCAGGC CATGCCGAGC TGAATCGGCG CATCGAGCAG
TTCCGGCTGC AGTCGCGGGC CTGGGTCGAC GCCGGCATGG GCGTGCACGG CCAGGCGGCG
ATGCGGGTGG CCGAGGGCGA ACTGCTGCGG GCCTTGAAGG CCTCGTGGCT CGACACCAGC
CAGGCGCTCG ACGGCCTGCT GCTGCAGCGT GTCGACCGGC TCTATGCGCG CATGTGGCTG
CACCTGGGCA CGGCGCTGTT CCTGCTGCTG TGCGTGCTGG CGGTGGTCAG CTTCGTGGCC
GGCCAGATCG CCCGGCCGCT CAAGCGCCTG TCGACCGTGG CCGACACCGT GCGGCGCACC
GGCGACCACG GCCAGCGCGT GGACTGGCAG AGCTCCGACG AGATCGGCCG GCTGGTCGAC
GCCTTCCACG ACATGCTCAG CCAGCTCGAG ACCGAGCGCG ATCGCCAGAA GGAGATGGCC
GCCCGCGAGC GCGCCGCCGA GGCCCAGCGC AGTCTGCTCG AGGCCATGCC GGTGCCGCTG
ATGGTGACGG CGGTGCCCGG CCACGAGGTG CTGCACGCCA ACGCGCCGGC GCGGCTGTGG
ATCGGCGAGC GGCTGGCCGA TCCGTGGGCG CTCGGGCTCG ATTCGCACGT GCGAGCGCGC
TTTTTCCAGC AGTTGCAGGA CCGCGACGCG GTCGACGAGT TCGAGGTCCA CTGGCGCGGC
CCGACCGAGG CCGTCTGGGC GGTGCTGTCG GCGCGGCGCA TCGTCTTCCA GGGGCGCGAC
GCGGTGCTCA CCACGCTGGC GCCGATCAAC CACCTCAAGC AGCTCGAGCA GCGGCTCGAG
CTCTGGGCCA AGGTGTTCGA GACCTCGTCG GAGGGCATCT TCATCGTCGA CGCCCAGCAG
CGCATCCTGA CCGCCAACTG GGCGCTCACG CGCAGCACCG GCCACGACCT GATCGAGCTG
ATGGGTGGCG ATCCGGCCGA ACTGCTGGCC GGCGCCGACG CCCGCCAGAC CTGGCAGTCG
CTGGTCGAGC GGGTGCAGAC ACGCGGCAGC TGGCAGGGCG AGGTGCGTAT CTGCCGCCGC
GCCGGTGGCG ACTACCCGGC CTGGCTGCTG GCCAACGCGG TGCGCGACCG CGCCGGCCAT
GTCTCGCACT GGGTTTGCAC CTCGATCGAC ATCACCGACC GCAAGGAAAG CGAGCGGCGC
ATCCGTTTCC TGGCCGAACA CGACGTGCTG ACCGAGCTGC CCAACCGCGC GCTGTGCATC
GAGCGCCTGC GCCTGGCGCT GCAGCAGGCC CGGCGCACGG GGCAGAAGGT GGCCGTGCTG
TTCATCGACC TCGACCGCTT CAAGAACATC AACGATTCGC TCGGCCACCA CGTCGGCGAC
GGCCTGCTGC GCTCGGTGGC GCAGCGCCTG GTCGACGGCG TGCGCGCCGG CGACACCGTC
AGCCGCCTGG GCGGTGACGA GTTCGTGGTG GTGCTCAACG GCCTGGCCGA CATCGAGGAG
GTCGCGCACG TGGTCGAGCA GCGTCTGATC CCGCGCGTGC GCCAGCCGCA CGGCGTGCAG
GGCGCGGAGA TCCACGTGTC GTGCAGCGTG GGCATCTCGG TCTTCCCGGA CGACGCCCAG
GACATCGACG AGCTGATGCG CCAGGCCGAC GTGGCGATGT ACCAGGCCAA GGCGCAGGGC
CGCAACGGCG CACAGTTCTT CACCGCCGAG ATGAACCAGC GCGCGCAGGC GCGCCTGATG
GTCGAGAACC ACCTGCGCAG CGCCGTGGCG CAGGGCCAAC TGTCGCTGCA CTACCAGCCG
CGCATCCATG TGGCCGACGG CCGGGTGGCG GGGGTCGAGG GGCTGCTGCG CTGGCACAGC
CCGGAGCTGG GTCATGTGCC GCCGGACCGC TTCATCCCGG TGGCCGAGGA GACCGGCCTG
ATCATCGAGA TCGGCGCCTG GGTGATCGAG GCCGCCTGCG CCCAGATCGA GCGCTGGCGC
GGCCAGGGGC TGCAGGAGGT GGCGGTGTCG ATCAACCTGT CGGCGCTGCA ACTGCGCGAC
CCCGGCCTGC TCGACGTGCT GCGCGCCAGC CTCGAACGCC ACGCCGTGCC GCCCGGTCAG
CTCGAACTGG AGCTGACCGA GTCGATCCTG ATGGACCAGG TCGATGCCCA CCTGGTCACC
TTGCACGCCT TGCGCGAACT GGGGCTGCGC CTGTCGATCG ATGATTTCGG CACCGGCTAT
TCGAGCCTGA ACTACCTCAC GCGCTTCCCG ATCGACCAGC TCAAGATCGA CCGCTCCTTC
GTGCGCGACA TGCTCGACGA CCCACGTGAC CTCGCCATCA TCAAGGCCAT CATCGGCCTG
GGCCACACGC TGGGGTTGAA GGTGGTGGCC GAAGGCGTCG AGCGCGAACT CGAGGTGCAG
GCGCTGCGCG CAGCCGGCTG CGACGAGCTG CAGGGTTACC ACTTTGCCCG GCCGATGGCG
GCCGACACCG CCACCGCCTG GCTGCTGGAC TGGATCCGCC GCCAGGCGGC CGTGCGTGGC
GGCAACTTGC CGGCCGAGTT TCCGGTCTGA
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| Protein sequence | MLTLLVRLVG RLSVGRKLML IYLLDLSSVL YVAGILIDEK FIAIDFARKE LAGSAYVRVV
ADALVDVAGA GQPPSTAAPA LPTATHLQRL AEQARAQDAG MRSAEVSAPL ADAITRWAEP
AAGRPRATVD EVLRRGQDLL TRVGNQSNLI LDPDLDSYYS MSIVVLRLPE LLQVVHGIAH
HAETGVGRDA RSVYLVLEGR LDAIAQGLES DHAEAFAAGS PALKAALSPG HAELNRRIEQ
FRLQSRAWVD AGMGVHGQAA MRVAEGELLR ALKASWLDTS QALDGLLLQR VDRLYARMWL
HLGTALFLLL CVLAVVSFVA GQIARPLKRL STVADTVRRT GDHGQRVDWQ SSDEIGRLVD
AFHDMLSQLE TERDRQKEMA ARERAAEAQR SLLEAMPVPL MVTAVPGHEV LHANAPARLW
IGERLADPWA LGLDSHVRAR FFQQLQDRDA VDEFEVHWRG PTEAVWAVLS ARRIVFQGRD
AVLTTLAPIN HLKQLEQRLE LWAKVFETSS EGIFIVDAQQ RILTANWALT RSTGHDLIEL
MGGDPAELLA GADARQTWQS LVERVQTRGS WQGEVRICRR AGGDYPAWLL ANAVRDRAGH
VSHWVCTSID ITDRKESERR IRFLAEHDVL TELPNRALCI ERLRLALQQA RRTGQKVAVL
FIDLDRFKNI NDSLGHHVGD GLLRSVAQRL VDGVRAGDTV SRLGGDEFVV VLNGLADIEE
VAHVVEQRLI PRVRQPHGVQ GAEIHVSCSV GISVFPDDAQ DIDELMRQAD VAMYQAKAQG
RNGAQFFTAE MNQRAQARLM VENHLRSAVA QGQLSLHYQP RIHVADGRVA GVEGLLRWHS
PELGHVPPDR FIPVAEETGL IIEIGAWVIE AACAQIERWR GQGLQEVAVS INLSALQLRD
PGLLDVLRAS LERHAVPPGQ LELELTESIL MDQVDAHLVT LHALRELGLR LSIDDFGTGY
SSLNYLTRFP IDQLKIDRSF VRDMLDDPRD LAIIKAIIGL GHTLGLKVVA EGVERELEVQ
ALRAAGCDEL QGYHFARPMA ADTATAWLLD WIRRQAAVRG GNLPAEFPV
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