Gene Lcho_1816 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1816 
Symbol 
ID6161378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1963237 
End bp1963710 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content62% 
IMG OID641664578 
Product4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 
Protein accessionYP_001790848 
Protein GI171058499 
COG category[C] Energy production and conversion 
COG ID[COG0437] Fe-S-cluster-containing hydrogenase components 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.000160939 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGAAGA GCCTTCACAT CAACCCGGAC AAGTGCACGG GTTGCTTGCA ATGCGAAATG 
GCTTGTTCCT ACGAGAACTA CGGCGTCTTT GCGCCGGCCA AGTCGCGCAT CAAGGTGTTC 
GATTTCCACG AGACCGGGCG CAAGGTGCCC TACACCTGCA CCCAGTGCGA CGAGGCCTGG 
TGCCTGCACG CCTGCCCGGT CGAAGCGATC ACGCTCGACA AGGCGACCGG CGCCAAGGTC 
GTCAACGACA CCACCTGCGT GGGCTGCAAG GTCTGCACGA TCAGCTGCCC CTTCGGCACG 
ATCAACTACG TGCAGGAAAC CGGCAAGGTG CAGAAATGCG ACCTGTGCGG CGGCGAACCG 
GCCTGCGCCG AAGCCTGCCC GACCGGCGCG ATCACTTTCA TCGACTCCAA CTGGACCGGC 
TTGAACAAGA TGCAAGCCTG GGCCGACAAG TTGGGCAACC AAGCAGCTGC TTGA
 
Protein sequence
MQKSLHINPD KCTGCLQCEM ACSYENYGVF APAKSRIKVF DFHETGRKVP YTCTQCDEAW 
CLHACPVEAI TLDKATGAKV VNDTTCVGCK VCTISCPFGT INYVQETGKV QKCDLCGGEP 
ACAEACPTGA ITFIDSNWTG LNKMQAWADK LGNQAAA