| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1790 |
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| Symbol | |
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| ID | 6163289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1932491 |
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| End bp | 1934752 |
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| Gene Length | 2262 bp |
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| Protein Length | 753 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664552 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001790822 |
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| Protein GI | 171058473 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000112297 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCACAA GTTATCTGCC GCACTCGGCC AGCAACCGCG GGCGTCAGCA AGCCGACGAC
GCGCGGCGGC CGATCGCCTC GGCCTTGCCG CTCGGCGAGG CGCACGTGGA GCGCATCGAC
GAGTCGCACG AACGCTGCCA GGCCTTCGGC CTGTCGCGCA TCGAACGGCC CGATTTCTCG
CCGATGGGCC GCTCCGACCT CGGCGTCGTG CGCGATCGCA ACCAGCGCCT GTACGTGCAT
GCCGCGCCGG TGATGGAGAT GCTCTACGAG CAGATCGTCA ACAGCCAGAA CATGGTGGTG
CTGACCGATG CCACCGGCAC CATCATCCAC TCGATCGGCG ACGACGACTT CCTCAGCCGC
GCCTCCAAGG TGGCGCTGCA GCCGGGCGCC AACTGGTCGG AGTCGAGCAA GGGCACCAAC
GGCATCGGCA CCGCGCTGAT CGAGGAAACC CCCACGCTCG TGCATGCCGA CGAGCACTTC
CTGCATGCCA ACCACTTCCT GACCTGCTCG GCCGCGCCGA TCCTCGACCC GCGCGGCAAC
ATCCTCGGCG TGCTCGACGT CTCCGGCGAC CAGCGCAGCT ACCACCAGCA CACGATGGGG
CTGGTGAAGA TGTCGGCGCG CATGATCGAG AACCACTGGC TCAGCGACGA CTACCGCAAC
GTCATGCGGC TGCATTTCCA CAGCCGCGTC GAGTTCATCG GCACGCTGAT GGAGGGCATC
CTCGCGGTCA GCCAGGACGG CAAGCTGGTC GGCGCCAACC GCGGCGCGCT CGAGCAGCTC
GGCCTGAGCG GCGCGGCGCT GCGCATGCAC ACGCTGACCT CGCTGTTCGG CACCACGGTG
CCGGCGCTGG TCGACCGCTT CCGCTCGCCG CTGGCCGCGC CGCTGTCGGT GGAGGCCGGC
AGCGGGCGCC AGTTCCACGT CTATGCTCGC TTCAGCTGGC CGGTCTGGCA CAACGCCGAT
CCGTCGGTGC GCGACGAGCC TGTGCAGCCG GCCGTCGAGC GCAGCACCGA TCGCGTGAGC
GAGCGTGCCG GCGAACGCCC GGCTGCCCCG GCGCCGAGCG CCTCCGCGGC CGAGCCGCGC
CAGGCCGCCG GCCAGGGCTC GCGCGAGGGC CTGGCCAGCC TGACCACCGG CGACGCGGCG
GTCGGCACGC TGGTCGACAA GATCCGGCGC GTGCTCAACC GCGACATCCC GATCCTGATC
CTGGGCGAGA CCGGCACCGG CAAGGAGCTG CTGGCGCGCG CCATCCACCA GGATTCGGAG
CGCGCCAAGC AGCCGTTCGT GGCGGTCAAC TGCGCCTCGA TCCCCGACAC GCTGATCGAG
GCCGAGCTGT TCGGCTACGA GGAGGGCGCC TTCACCGGCG CGCGCCGCAA GGGCGCGGTC
GGGCGCATCG TGCAGGCCAA CGGCGGCACG CTGTTCCTCG ACGAGATCGG CGACATGCCG
CTGGCCCTGC AGGCGCATCT GCTGCGGGTG CTGCAGGAGC GCCAGGTCAC GCCGCTGGGC
AGCGGCAAGG CGGTGGCGGT GGACGTGACG CTGGTCTGCG CCACCCACCG CAACCTGCGC
GAGATGATCG AGCAGAAGAC CTTCCGCGAG GATCTCTACT ACCGCCTCAA CGGCCTGGCC
GTGCGGCTGC CGGCGCTGCG CGAGCGCAGC GACCTGATGG CGCTGGTCGA CCGCATCCTC
GAGCGCGAAT GTCCGCGCCG CCGACTGCAG CTCAGCGCCG AGGTGGTCAA GCTGTTCCAG
GGCTACCACT GGCCGGGCAA CGTGCGCCAG CTCTTCAATG TGCTGCGCAC CGCCTGCGTG
ATGGCCGCCG GCGACAGCCA GGTCACGCGC GATCACCTGT CCGACGACTT CATCGAGGAC
GCCGGCCGGG CGCTCGACTC GCGCGCCGCG GCCGCTGCGG CGGTCGCCGC CGAACCGGCC
GCTGCGTTGC CGTCGGCGTA CGTGGCCCCG CAGCCCGCTG CCGCGGTGCC GGCCGAGCGC
TCGCCGCAGA CGGGCGCGGG CGCCGCGACC GGCCGGGCCG ATCCGGCGGC TTCGCGCCAG
GCCGAGCCCA TCGCCGGGGC GCCCGACTGG CTGGTGCCAC GCCCGGTGGC TGCCGCGCCG
GCGGCGGCCG ACGAGCCCTC GCGCTCGCTC GAGGACATCG AGCTGCAGAG CATCCGGCTG
GCAGTCGAGG CGGCCGGCGG CAACATCTCG GTGGCGGCCA AGCGGCTGGG CATCAGCCGC
AACACGATCT ACCGCAAGCT GCGCTGGAAC ACGCCGCGTT GA
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| Protein sequence | MATSYLPHSA SNRGRQQADD ARRPIASALP LGEAHVERID ESHERCQAFG LSRIERPDFS
PMGRSDLGVV RDRNQRLYVH AAPVMEMLYE QIVNSQNMVV LTDATGTIIH SIGDDDFLSR
ASKVALQPGA NWSESSKGTN GIGTALIEET PTLVHADEHF LHANHFLTCS AAPILDPRGN
ILGVLDVSGD QRSYHQHTMG LVKMSARMIE NHWLSDDYRN VMRLHFHSRV EFIGTLMEGI
LAVSQDGKLV GANRGALEQL GLSGAALRMH TLTSLFGTTV PALVDRFRSP LAAPLSVEAG
SGRQFHVYAR FSWPVWHNAD PSVRDEPVQP AVERSTDRVS ERAGERPAAP APSASAAEPR
QAAGQGSREG LASLTTGDAA VGTLVDKIRR VLNRDIPILI LGETGTGKEL LARAIHQDSE
RAKQPFVAVN CASIPDTLIE AELFGYEEGA FTGARRKGAV GRIVQANGGT LFLDEIGDMP
LALQAHLLRV LQERQVTPLG SGKAVAVDVT LVCATHRNLR EMIEQKTFRE DLYYRLNGLA
VRLPALRERS DLMALVDRIL ERECPRRRLQ LSAEVVKLFQ GYHWPGNVRQ LFNVLRTACV
MAAGDSQVTR DHLSDDFIED AGRALDSRAA AAAAVAAEPA AALPSAYVAP QPAAAVPAER
SPQTGAGAAT GRADPAASRQ AEPIAGAPDW LVPRPVAAAP AAADEPSRSL EDIELQSIRL
AVEAAGGNIS VAAKRLGISR NTIYRKLRWN TPR
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