| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1781 |
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| Symbol | |
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| ID | 6162819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1925206 |
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| End bp | 1925799 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641664543 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_001790813 |
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| Protein GI | 171058464 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0000000929504 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGTCTGCCC TGCTTCAACT GTCCAAGCTG ATCGATGCGC TCAGCGAGCG CATCGGCCGT
TGGGCGTCGT GGCTGGTGTT GGCGGCCGTG CTCATTTCCG CGATCAACGC GGTGGTGCGC
AAGGCCTTCA ACGTCAGCTC CAACGCCTAC CTCGAAATCC AGTGGTACCT GTTCGCCGCG
ATGTTCCTGC TGGCGGCGGG CTACACCATG CTGCGCCAGG AGCACGTCAA GATCGACGTC
ATCCTGCACC GCTTCACCAA GCGCACGCAG ATCAAGATCG AGATCTTCGG CATCGTCGCC
TTCCTGTTCC CGCTCGTGCT GGTCGTGATC GACCTGTCGT GGCCGCTGGT GGTCAAGGCC
TGGCTGACCG GCGAGATGTC GTCCAACGCC GGCGGCCTGA TCCGCTGGCC GGTGTACGCG
ATGCTGCCGA TCGGCTTTGC GCTGCTCGGC CTGCAAGGCA TCTCCGAGCT GATCAAGCGC
GTCGCCTTCC TGAAGGGGCT GATCGACGAT CCGACCGAGA AGAAACTGGC CAAGACCGCC
GAAGAAGAAC TCGCCGAAGC GATCCGTGCC GCGGCTGAAG GAGCCAAGAA ATGA
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| Protein sequence | MSALLQLSKL IDALSERIGR WASWLVLAAV LISAINAVVR KAFNVSSNAY LEIQWYLFAA
MFLLAAGYTM LRQEHVKIDV ILHRFTKRTQ IKIEIFGIVA FLFPLVLVVI DLSWPLVVKA
WLTGEMSSNA GGLIRWPVYA MLPIGFALLG LQGISELIKR VAFLKGLIDD PTEKKLAKTA
EEELAEAIRA AAEGAKK
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