| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1759 |
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| Symbol | |
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| ID | 6162056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1888467 |
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| End bp | 1890023 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664521 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001790791 |
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| Protein GI | 171058442 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0119826 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGGC GCACGGCGAA TCCCTGGCCC TGGTTGCAGG CACGCCTGCA GGCCTGCCTG
CCGGCGCGCT GGCGGCGGGT CCAGGCCGAG CCGGTCGAGA ACCCGTCTGC ACCGGCCAGG
AGCCCGGACG CACCGGCCGC CAAGCCGCGC AAGCCCGTGG GCATCCGCCG CGGCGGGCCG
GGGCGACGCG CCACCGACGT CGACCGCCAG GAACCGCTGA TGGGCCTGGA GGCCGAGCTG
GCCGCGCTGC GCCGGGGCGA GCCGGTGCCC CCCGGCTCGG CCGCCCCCAC GCCGCAACCG
GCCGCAGCGG CGCGGGCGGC AACGCCGGCG GGGGCGCAGG TCACCCGCAT CCATCCCGGC
AGGGTGATGC GCGGCGACGC CGAGTTCCTG GAGGGTGTGC GCGAGGCGCA GGTCAACGAG
GGCACGCCGC GTGCGCTGTG GGTGCTGTAC CTGCTGTGCG CGATCGTGGT CAGCGTGCTG
GTCTGGGCGA CGCGGGCGCA GATCGATGTC GTCACCAAGG CCGAGGGCAA GGTCGTGCCG
GACGCGCGCG AGCAGGTCAT CGCCAGCCTG GAGGGCGGCA TCCTGCGCGC CTTGCACGTG
CGCGAAGGTG CGATCGTCGA GGCCGGCGAC GAGCTGGTCC AGCTCGACCC GACCCGCATG
GTCGCGCAGC AGAACGAGGG CCAGGCGCGC CAGACCGCGA TGCGCGGCAC GGTCGCACGG
CTGCAGGCCG AGGTCCACGG CCGGCCGCTG GTGTTTCCAC CCGAGGTCCG GGTCGACACG
GCGGTGGTGG CGGCCGAGAC CGAGGCCTAC AACGCCCGCC GCCGCCTGCT CGACGAGGCG
GTCACCGTGA CCCGGCGCAG CATCAGCCTG ATCGACAACG AGCTCGGCAT GGCCACCTAC
ATGTCCGAAC AGGGCCTGAT GTCGGAGGTC GAGGTGATGC GGCTGCGCCG CCAGCGCAAC
GACCTGCAGA TCCAGGTGCA GGAGCGCATC AACCGCTTCC GCCAGGACGC CTCGACCGAG
CTGCTGCGTC TGCGCACCGA GCTGACGCTG ATCGGCGAAC AGCAGGTGGT CAAGGAAGAC
GCGCTCAAGC GCACGGTGCT GAAGTCGCCG CTGCGCGGCA TCGTCAAGAA CATCCGCATC
AACACGCTCG GCGGCGTGGT GCCGGCCGGC GGGGCGATCA TGGAGATCGT GCCGATCACC
GACCGGGTGC TGGTCGAGGC CCGCATCAAG CCGGCCGACA TCGGCTTCAT CCAGCTCGGC
ATGCCGGCCG AGATCAAGCT CAGCGCCTAC GAGTACTACA CCTACGGCGG CCTCAAGGGC
ACCATCGAGT ACCTCAGCCC CGACGCCCTG ACCGACGAGC GCGGCGGCCC CGACAGCAGC
TACTACCGCG CGCGCATCCG CACCGACGCC AGCCACCTGC GCGGCAAGGG CGACCGCGCG
CTGGCCGTGC TGCCCGGCAT GGTCGCCAAC GTCGAGATCC GCACCGGCGA CCGCACGGTG
ATGGAGTTCC TGCTCAAGCC GATGCTCAAG GGCAGCGAAG CGTTCCGCGA GCGTTGA
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| Protein sequence | MARRTANPWP WLQARLQACL PARWRRVQAE PVENPSAPAR SPDAPAAKPR KPVGIRRGGP
GRRATDVDRQ EPLMGLEAEL AALRRGEPVP PGSAAPTPQP AAAARAATPA GAQVTRIHPG
RVMRGDAEFL EGVREAQVNE GTPRALWVLY LLCAIVVSVL VWATRAQIDV VTKAEGKVVP
DAREQVIASL EGGILRALHV REGAIVEAGD ELVQLDPTRM VAQQNEGQAR QTAMRGTVAR
LQAEVHGRPL VFPPEVRVDT AVVAAETEAY NARRRLLDEA VTVTRRSISL IDNELGMATY
MSEQGLMSEV EVMRLRRQRN DLQIQVQERI NRFRQDASTE LLRLRTELTL IGEQQVVKED
ALKRTVLKSP LRGIVKNIRI NTLGGVVPAG GAIMEIVPIT DRVLVEARIK PADIGFIQLG
MPAEIKLSAY EYYTYGGLKG TIEYLSPDAL TDERGGPDSS YYRARIRTDA SHLRGKGDRA
LAVLPGMVAN VEIRTGDRTV MEFLLKPMLK GSEAFRER
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