Gene Lcho_1754 details

Gene Information

• Locus tag: Lcho_1754
• ID: 6160319
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1876862
• End bp: 1882291
• Gene Length: 5430 bp
• Protein Length: 1809 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641664516
• Product: large exoprotein involved in heme utilization or adhesion
• Protein accession: YP_001790786
• Protein GI: 171058437

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.0481615
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCACGA TCGTCACCTC CCTTACCACC GCGCAGGTTG CGGGCCTGTC GACCCAGTCG 
ATCGCTGGCT TGAACACGGA GGACTTCGCA GCTTTCAGCA GCGAGCAGAT TGCTGCCCTC 
AACTCCGCGC AGCTGGCCGC GATCGAGACC GCCGACCTGG AGGTGATCAC CACCGAAGCG 
CTGGCCGGTC TTGAAACCAG CGACATCCGC GGCCTGACGA CGCGCCAGAT GCAGGCGCTC 
ACCACCGATC AGATCGCGGC GTTGACGACG GCTCATTTCG CCGCCATGAC CACCGCCCAG 
GTGGCCTCGC TCACCACCTC GCAGATCCAG GCGATCGAGA CCGACGACAT CGCCGCCTTC 
ACCACCGCCC AGGCGGCTGC GCTGTCGGCC GCCCAGGTGG CGGCGTTCTC GACCAGCCAG 
GTCGCGGCCC TCGAGACCCA GGACCTGCGG GCGATCAACA CCACCGCCCT GCGTTCGCTC 
GGCACCGACG GCATCGACGC CTTGAGCACC GCCCAGGCGG CTGCGCTCAG CACCACCCAG 
GTGGCGGCGC TGACGACCGA ACAGGTTCAG GCGATCGCCA CCGACGATTT CGCCGCACTC 
ACCTCGGCCC AGATCGGGGC GATCAGCACC ATCCAGCTCG GTGTGCTGTC GACCAGCCAG 
GTCGAAGCCC TCACCACCGG CCAGATCGCC GGCCTGAGCA CGCGCCAGGT CGCCGCGCTC 
AGCACCGACC AGGTGGTGGC CCTTGCCACC GACAACATCG CCGCACTCAG CTCCACGCAA 
GTGGCCGCGC TGAACACCGA TCAGGCCGGC GCGCTCACCA CCGAGCAGGT CCAGGCGATC 
GAGACCCAGG ACCTGCGTGC CCTCAAGACC ACCGCCCTGC AGGCGCTGGG CACCGACGCG 
ATCGACGCGC TCACCACCGC GCAGGTCGCG GCACTGAGCA CGGCCCAGGT CGCCTCCCTC 
ACCACCACGC AGATCGAGGC GGTCGCGACC GACGACATCG CCGCGCTCAC CACTGCCCAG 
GCCGCCGTGC TGGGGGCGGC CCAGATCGCG GTACTTGACA CCAATCAGGT CCAGGCGCTG 
GAAACCACCG ACCTGCGCGC CATCAACACC ACGGCGCTGC GCTCGCTGAG CACCGACGGG 
ATCGATGCCC TGACGACCGA CCAGGCGGCG GCGCTGACCA CCTCGCAAGT CGCGGCATTG 
ACCACCGACC AGGTGCAGGC GATCGCCACC GACGACCTGG CCGCGCTCGG CACCACGCAG 
ATCAACGCGC TGGGCACCAG CCAGATCGGT GCGCTGTCGA CCGGCCAGAT CGACGCGCTC 
GGCACCCAGC AGATGGCCGG CCTGAGCACC CGCCAGGTGG CCGCGCTGAG CACCGAGCAG 
GTCGAGGCCT TGCAGACCGC CAACATCGCC GCACTCAGTT CCACCCAGGC GGCCGCGCTG 
AGCTCCGCCC AGGTCGGTGC ACTGACGACC GACCAGGTCC AGGCCCTCGA GACGCAGGAC 
CTGCGCGCGA TCAAGACCGC TGCGCTGCAA GGGCTGAGCA CCGACGGCGT CGAGGCCCTG 
ACCACCGCGC AGGTCGTCGC GCTGAGCACC GCCCAGATCG CCGCGCTGAC CACCGCACAG 
GTCGAAGCCA TCGCCACCGA CGACATTGCC GTGCTCCAGA CCAGCCAGGT CGCGGCCATC 
ACGTCCACGC AGGTGCCGGC CCTGAGCACC GACCAGTTGC AGTCCATCAC CACGCTGGAT 
GTGCGCGCGA TGACGACCCG CACGCTGCAG GCGCTCGGCA CCGACGCCAT CGACGCGCTG 
ACCACCGCAC AGGCGGCGGC GCTGACCAGC GCGCAGATCG CGGCGCTGAC GACCGCGCAA 
GTCGAGGCGA TCGCCACCGA CGACATCGCC GCGCTGACCA GCAGCCAGAT CGGCGCCTTC 
ACGACCACCC AGCTGGCGGC GGTCACCACG GCGCAGATCG AGGCGCTCGT GAGCGCCCAG 
ATCGCCGGCC TGAACACCCG CCAGATCGCC GCGCTGAGCA CCGACCAAGT CCAGGCGCTG 
GAGACCGACG ACATCGCAGC CCTGAGCTCG ACCCAGGCCG GCGCACTCGC GGCGACCCAG 
GTCGGTGCGC TGACGACCGA CCAGGTCCAG GCCCTCGAGA CGGCCGACCT GCGCGCCCTC 
AAGACCACCG CCCTGCAGGC GCTGAGCACC GACGCCATCG ACGCGCTGAC CACCGCGCAG 
GCGGCGGCGC TGACCAGCGC GCAGATCGCC GCGCTGACGA CCGCGCAAGT CGAGGCGATC 
GCCACCGACG ACATCGCCGC GCTGACCAGC AGCCAGATCG GCGCCTTCAC GACCACCCAG 
CTGGCGGCGG TCACCACGGC GCAGATCGAG GCGCTCGTGA GCGCCCAGAT CGCCGGCCTG 
AACACCCGCC AGATCGCCGC ACTGAGCACC GACCAGGTCC AGGCGCTGGA GACCGACGAC 
ATCGCGGCCC TGAGCTCGAC CCAGGCCGGC GCACTCGCGG CGACCCAGGT CGGTGCGCTG 
ACGACCGACC AGGTCCAGGC ACTGGAAACC GCGGACCTGC GCGCCCTCAA GACCACCGCC 
CTGCAGGCGC TCGGCACCGA CGGCATCGAC GCGCTCACCA CGGCGCAGAT GGCGGCACTG 
ACCAGCGCGC AGATCGCCGC GCTGACGACC GCGCAGGTCG AGGCCATCGC CACCGACGAC 
CTCGCCGCGC TGACCACCAC GCAGGCCGCC GCCCTGAGCT CGACCCAGGT CGGCGCGCTG 
ACGACCGACC AGGTCCAGGC ACTGGAAACC GCCGACCTGC GTGCCCTCAA GACCACCGCC 
CTGCAGGCGC TGAGCACCGA CGCCATCGAC GCGCTGACCA CCGCGCAGGC GGCGGCGCTG 
ACCAGCGCGC AGATCGCCGC GCTGACGACC GCGCAAGTCG AGGCGATCGC CACCGACGAC 
ATCGCCGCGC TGACCAGCAG CCAGATCGGC GCCTTCACGA CCACCCAGCT GGCGGCGGTC 
ACCACGGCGC AGATCGAGGC GCTCGTGAGC GCCCAGATCG CCGGCCTGAA CACCCGCCAG 
ATCGCCGCAC TGAGCACCGA CCAGGTCCAG GCGCTGGAGA CCGACGACAT CGCGGCCCTG 
AGCTCGACCC AGGCCGGCGC ACTCGCGGCG ACCCAGGTCG GTGCGCTGAC GACCGACCAG 
GTCCAGGCAC TGGAAACCGC GGACCTGCGC GCCCTCAAGA CCACCGCCCT GCAGGCGCTC 
GGCACCGACG GCATCGACGC GCTCACCACG GCGCAGATGG CGGCACTGAC CAGCGCGCAG 
ATCGCCGCGC TGACGACCGC GCAGGTCGAG GCCATCGCCA CCGACGACCT CGCCGCGCTG 
ACCACCACGC AGGCCGCCGC CCTGAGCTCG ACCCAGGTCG GCGCGCTGAC GACCGACCAG 
GTCCAGGCAC TGGAAACCGC CGACCTGCGT GCCCTCAAGA CCACCGCCCT GCAGGCGCTG 
AGCACCGACG CCATCGACGC GCTGACCACC GCGCAGGCGG CGGCGCTGAC CAGCGCGCAG 
ATCGCGGCGC TGACGACCGC GCAAGTCGAG GCCATCGCCA CCGACGACAT CGCCGCGCTG 
ACCAGCAGCC AGATCGGCGC CTTCACGACC ACCCAGCTGG CGGCGGTCAC CACGGCGCAG 
ATCGAGGCGC TCGTGAGCGC CCAGATCGCC GGCCTGAACA CCCGCCAGAT CGCCGCGCTG 
AGCACCGACC AGGTCCAGGC GCTGGAGACC GACGACATCG CAGCCCTGAG CTCGACCCAG 
GCCGGCGCAC TCGCGGCGAC CCAGGTCGGT GCCTTGACGA CCGACCAGGT CCAGGCGCTG 
GAGACGGCTG ACCTGCGTGC CCTCAAGACC ACCGCCCTGC AGGCGCTCGG CACCGACGGC 
ATCGACGCGC TCACCACCGC GCAGATGGCG GCGCTGACCA GCGCGCAGAT CGCGGCACTG 
ACGACCGCGC AAGTCGAGGC CATCGCCACC GACGACCTCG CCGCGCTGAC CACCACGCAG 
GCCAACGCCC TGAGCTCGAC CCAGGTCGGT GCGCTGACGA CCGACCAGGT CCAGGCGCTG 
GAGACGGCTG ACCTGGCGGC CTTCAAGACC ACGACCCTGC GTGGCTTGAC CACCGAGGCG 
ATCGAGGCGC TGACCTCCGA TCAGGTCGCG GCATTGACGT CGACGCAGAT CGCGGCGCTG 
ACCACCGAGC AGGTGCAGGC CATCGAGACC GACGACTTCG CGGCGCTGAC GACGGCGCAG 
GTGGCGGCCT TCACCACCAG CCAGATCAGT GCCCTCAGCA CCGAGCAGAT CGTGGCCTTC 
GATACCGCCG ATGTGGAGGC GCTGACGACC GCGCAGTTGC GGGCACTGAG CACCGAGCAG 
ATCCAGGCGC TGGAGACGAG CGACGTCGCG GCCATCACGA CCAGCGATTT CGCGTCGCTC 
GGTACCACGC AGATCGAAGC ATTCGGCACC GAGCAGATCC AGGCTCTGAC GACCGAGCAG 
ATCGCCGCCT TCACCACCTC GCAGGCGGCG GCGCTGACCA CCGACGCGAT CGTGGCGCTG 
ACCACCGATC AGGTGGTGGC GCTGCAGACG AGCGACATCG CGGCGATGTC GATGACGCAG 
GTCTCGGCCT TCGAGACCAG CGACATCGCG GTGATGAGCG CGGCCCAGAT CGACTCGATG 
ATCGGCGCCA CGCCGCTGGT GCTCGACCTC AACGGCGACG GCGTGCAGAC GCTGGCGGCC 
GCGGACGGCG TGCAGTTCGA CATCAACGCC ACCGGGCAGA GCGCGCAGGT CGGCTGGGCC 
TCGGCGCAGG ACGGCCTGCT GGTGCGTGAC CTGAACGCCG ACGGCCAGGT CAACGACGGC 
CGCGAGCTGT TCGGTGGCGG CACCGAACTG GCCAGCGGCC AGCGCGCCGG CACCGGCTAC 
GCCGCCCTGG CCGACCTGGA CAGCAACCGC GACGGCAGCA TCAGCGCAGC CGACGCCGCG 
TTCAAGGAAC TGCAGGTCTG GGTCGACGCC GACAGCGACG GCCTGGCCGA TCTCGGCGAA 
CTGCGCACGC TGGCCGACCT GGGCATCGTG TCGATGGATC TGGGCGCGCA GCTGGGCACG 
ACGCTGGACA ACGGCAACCT GCTGGGCCTG ACGTCGAGCT ACCAGACTGC CGACGGCAGC 
AGCCACCAGA TGGCCGACGT CTGGTTCGCC AAGCAGGCGG ATGCGGCCAG CGGTGCGGCC 
GCAGCGGCCA CCACCGCGCC GGTGGCCCTG GGCGACGTGC TTGCCGACGC ACCGGGCGCC 
TTGATCGGGC AGGAGCCGAT CGACCCGGCG TTGCCGCCGG CCGGCGCCGG CCTGGCCGTC 
GACGCCCAGG CCCAGGCCGA TGCCGTCGCG GTATTCGCGC AGAACAACCT GGCGCTCGAC 
GAGCTGCTGC GCAATCAGCC ACTGATCTGA 

 

Protein sequence

MATIVTSLTT AQVAGLSTQS IAGLNTEDFA AFSSEQIAAL NSAQLAAIET ADLEVITTEA 
LAGLETSDIR GLTTRQMQAL TTDQIAALTT AHFAAMTTAQ VASLTTSQIQ AIETDDIAAF 
TTAQAAALSA AQVAAFSTSQ VAALETQDLR AINTTALRSL GTDGIDALST AQAAALSTTQ 
VAALTTEQVQ AIATDDFAAL TSAQIGAIST IQLGVLSTSQ VEALTTGQIA GLSTRQVAAL 
STDQVVALAT DNIAALSSTQ VAALNTDQAG ALTTEQVQAI ETQDLRALKT TALQALGTDA 
IDALTTAQVA ALSTAQVASL TTTQIEAVAT DDIAALTTAQ AAVLGAAQIA VLDTNQVQAL 
ETTDLRAINT TALRSLSTDG IDALTTDQAA ALTTSQVAAL TTDQVQAIAT DDLAALGTTQ 
INALGTSQIG ALSTGQIDAL GTQQMAGLST RQVAALSTEQ VEALQTANIA ALSSTQAAAL 
SSAQVGALTT DQVQALETQD LRAIKTAALQ GLSTDGVEAL TTAQVVALST AQIAALTTAQ 
VEAIATDDIA VLQTSQVAAI TSTQVPALST DQLQSITTLD VRAMTTRTLQ ALGTDAIDAL 
TTAQAAALTS AQIAALTTAQ VEAIATDDIA ALTSSQIGAF TTTQLAAVTT AQIEALVSAQ 
IAGLNTRQIA ALSTDQVQAL ETDDIAALSS TQAGALAATQ VGALTTDQVQ ALETADLRAL 
KTTALQALST DAIDALTTAQ AAALTSAQIA ALTTAQVEAI ATDDIAALTS SQIGAFTTTQ 
LAAVTTAQIE ALVSAQIAGL NTRQIAALST DQVQALETDD IAALSSTQAG ALAATQVGAL 
TTDQVQALET ADLRALKTTA LQALGTDGID ALTTAQMAAL TSAQIAALTT AQVEAIATDD 
LAALTTTQAA ALSSTQVGAL TTDQVQALET ADLRALKTTA LQALSTDAID ALTTAQAAAL 
TSAQIAALTT AQVEAIATDD IAALTSSQIG AFTTTQLAAV TTAQIEALVS AQIAGLNTRQ 
IAALSTDQVQ ALETDDIAAL SSTQAGALAA TQVGALTTDQ VQALETADLR ALKTTALQAL 
GTDGIDALTT AQMAALTSAQ IAALTTAQVE AIATDDLAAL TTTQAAALSS TQVGALTTDQ 
VQALETADLR ALKTTALQAL STDAIDALTT AQAAALTSAQ IAALTTAQVE AIATDDIAAL 
TSSQIGAFTT TQLAAVTTAQ IEALVSAQIA GLNTRQIAAL STDQVQALET DDIAALSSTQ 
AGALAATQVG ALTTDQVQAL ETADLRALKT TALQALGTDG IDALTTAQMA ALTSAQIAAL 
TTAQVEAIAT DDLAALTTTQ ANALSSTQVG ALTTDQVQAL ETADLAAFKT TTLRGLTTEA 
IEALTSDQVA ALTSTQIAAL TTEQVQAIET DDFAALTTAQ VAAFTTSQIS ALSTEQIVAF 
DTADVEALTT AQLRALSTEQ IQALETSDVA AITTSDFASL GTTQIEAFGT EQIQALTTEQ 
IAAFTTSQAA ALTTDAIVAL TTDQVVALQT SDIAAMSMTQ VSAFETSDIA VMSAAQIDSM 
IGATPLVLDL NGDGVQTLAA ADGVQFDINA TGQSAQVGWA SAQDGLLVRD LNADGQVNDG 
RELFGGGTEL ASGQRAGTGY AALADLDSNR DGSISAADAA FKELQVWVDA DSDGLADLGE 
LRTLADLGIV SMDLGAQLGT TLDNGNLLGL TSSYQTADGS SHQMADVWFA KQADAASGAA 
AAATTAPVAL GDVLADAPGA LIGQEPIDPA LPPAGAGLAV DAQAQADAVA VFAQNNLALD 
ELLRNQPLI