| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1707 |
|---|
| Symbol | |
|---|
| ID | 6162651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1824399 |
|---|
| End bp | 1825538 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641664467 |
|---|
| Product | pyridine nucleotide-disulfide oxidoreductase family protein |
|---|
| Protein accession | YP_001790739 |
|---|
| Protein GI | 171058390 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1252] NADH dehydrogenase, FAD-containing subunit |
|---|
| TIGRFAM ID | [TIGR03169] pyridine nucleotide-disulfide oxidoreductase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0000000807501 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCGA CCCGACAACT GCTGCTGATC GGCGGCGGCC ACGCCCACGC GCAGGTGGTG
CTCGACTGGC TGCGCGCGCC GCTGCCCGGC GTGGCGCTGA CGCTGGTCTC GCCCACGCCA
CTGGCGGCGT ATTCGGGCAT GGTGCCGGGC TGGCTGGCGG GCGACTACCG CTACGACGAG
ATCTGCATCG ACCTGGTGGC GCTGTGCCGC GCCGCGGGTG TGCACTTCAT CCAGGCCGAG
GTGACGGCGC TCGATGCCGG CGCGCGGTGC GTGCAGCTCG CCGACGGTCG CTCACTGGCC
TATGACCTGC TCTCGCTCAA CATCGGCTCG ACGCTGACGC CGCCGCTGCT GGCCGGGCGG
CAGGTGCTGT CGCTGCGGCC GCTGGGCGCG TTGCGCGAGG GCTGGGAGCG CAGTCTGAAC
GCGCTGCAGG ACTGGCCGAT CGAGCGGCCA TTGAGCGTCA CCGCGGTGGG CGGCGGCGCG
GCGGGTGCTG AGTCGCTGCT GGCGGTGCGC GCACGGCTGC TGCGCGAGCG GCCCGGCTTG
CGGGTGCAGG CCCGGCTCGT CACGCGGGGG CCGCAGTTGC TGGCGGGCAT GGCCGCAGGT
GCGGCGCGGC GGCTGGGCGG CGTGCTGGCT GCGGCCGGCG TGACGGTTCA GGCCGGCACA
CCGTACAGCG AGGCACTCGG GCAGGCGAGC GACCTGCTGC TGTGGGCCAC CGGTGCCCAG
GCGCATGCCT GGCCGGGCGT GAGCGGTCTG GCGGTCGACG GATCGGGTTT CGTGCGGGTG
GACGCGCATC TGCGCTCGGT CTCGCACCCG CAAGTCTGGG CGGTCGGTGA CTGCGCCGCC
TGGGCCGAAC CGCTGCCCAA GGCCGGCGTC TACGCGGTGC GCATGGGCCC GGTGTTGACG
CGCAACCTAC GCGCGGCGCT GGGCGACGGC GCTGCCCGCC CGTATCGGCC GCAACGGCGC
TACCTGGCGC TGCTGGCCAC CGGCGACGGC CAGGCGATCG CTTCATGGGG CGCCCTGTCG
GCGCAGGGGC GCTGGCTGTG GCGCTGGAAG GACCGCATCG ATCGCAGCTT CATCGCGCGC
TTTCGGGTCG ACCGCGCACG GCTCGGGGTC GCAGCCGGCG CAGAGGACGC TTCAGCATGA
|
|---|
| Protein sequence | MSPTRQLLLI GGGHAHAQVV LDWLRAPLPG VALTLVSPTP LAAYSGMVPG WLAGDYRYDE
ICIDLVALCR AAGVHFIQAE VTALDAGARC VQLADGRSLA YDLLSLNIGS TLTPPLLAGR
QVLSLRPLGA LREGWERSLN ALQDWPIERP LSVTAVGGGA AGAESLLAVR ARLLRERPGL
RVQARLVTRG PQLLAGMAAG AARRLGGVLA AAGVTVQAGT PYSEALGQAS DLLLWATGAQ
AHAWPGVSGL AVDGSGFVRV DAHLRSVSHP QVWAVGDCAA WAEPLPKAGV YAVRMGPVLT
RNLRAALGDG AARPYRPQRR YLALLATGDG QAIASWGALS AQGRWLWRWK DRIDRSFIAR
FRVDRARLGV AAGAEDASA
|
|---|
| |