| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1632 |
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| Symbol | |
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| ID | 6163454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1734180 |
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| End bp | 1735316 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641664386 |
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| Product | twitching motility protein |
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| Protein accession | YP_001790664 |
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| Protein GI | 171058315 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0705804 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACGCG ACCAGGCATC CAAGTTCATC AACGACCTGC TGCGCCTGCT GGTCTCGCGC
GGCGGCTCCG ACCTGTTCCT GACGTCGGAG TTTCCGCCGG CGATCAAGGT CGACGGCAAG
GTCACCAAGG TGTCGCCGCA GGCGCTGTCG GGCCAGCACA CGGTGGCGCT GGCGCGCGCG
GTGATGAACG ACAAGCAGAC CGCCGAGTTC GAGCGCACCA AGGAGTGCAA CTTCGCGATC
TCGCCGCAGG GCGTGGGGCG TTTCCGGGTC AATGCCTTCG TGCAGCAGGG CCAGGTCGGC
ATGGTGTTGC GCACCATCCC GCGCGAACTG CCCACGGTCG ACAAGCTCGG CCTGCCGAAC
GTGCTCAAGG ACATCGCGAT GACCAAGCGC GGGCTGGTCA TCATGGTGGG CGCCACCGGC
TCGGGCAAGA GCACGACGCT GGCGGCGATG GTCGACCACC GCAACATCAC GGCTTACGAC
CACATCATCA CGATCGAGGA TCCGGTCGAG TTCGTGCACC CGCACAAGAA CTGCATCGTC
ACCCAGCGCG AGGTCGGCAT CGACACGCTG GACTGGGGCG CGGCGCTGAA GAACACGCTG
CGCCAGGCGC CCGACGTGAT CCTGATGGGC GAGATCCGCG ACCGCGAGAC GATGGAGCAC
GCGGTCGCCT TCGCCGAGAC CGGCCACCTG TGCATGGCCA CGCTGCACGC CAACAGCGCC
AACCAGGCGC TCGACCGCAT CGTCAACTTC TTCCCCGAGG AACGCCGCGA CCAGCTGCTG
ATGGACCTGT CGCTCAATCT CAAGGCGATG GTCAGCCAGC GCCTGCTGCC GCGCGAGGAA
GGCAACGGCC GCATCGCCGC GGTCGAGATC CTGCTCAACA CGCCGCTGAT CACCGACCTG
ATCTTCAAGG GCGAGGTCTC CGAGATCAAG GAAGTGATGA AGAAGAGCCG CGAGCACGGC
ATGCAGACCT TCGACCAGGC GCTGTTCGCG CTCTACGAAG GCCATTACGT GAGCTACGAA
GACGCGCTGC GCAACGCCGA CTCGGTCAAC GACCTGCGCC TGCAGATCAA GCTGCACAGC
AGCCGTGCGC GCAACACCGA TTTCGGCTCC GGCACCGAGC ACCTGTCGAT CGTCTGA
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| Protein sequence | MERDQASKFI NDLLRLLVSR GGSDLFLTSE FPPAIKVDGK VTKVSPQALS GQHTVALARA
VMNDKQTAEF ERTKECNFAI SPQGVGRFRV NAFVQQGQVG MVLRTIPREL PTVDKLGLPN
VLKDIAMTKR GLVIMVGATG SGKSTTLAAM VDHRNITAYD HIITIEDPVE FVHPHKNCIV
TQREVGIDTL DWGAALKNTL RQAPDVILMG EIRDRETMEH AVAFAETGHL CMATLHANSA
NQALDRIVNF FPEERRDQLL MDLSLNLKAM VSQRLLPREE GNGRIAAVEI LLNTPLITDL
IFKGEVSEIK EVMKKSREHG MQTFDQALFA LYEGHYVSYE DALRNADSVN DLRLQIKLHS
SRARNTDFGS GTEHLSIV
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