| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1619 |
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| Symbol | |
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| ID | 6160490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1718323 |
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| End bp | 1720425 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664373 |
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| Product | flagellar biosynthesis protein FlhA |
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| Protein accession | YP_001790651 |
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| Protein GI | 171058302 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
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| TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.033261 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTCT CGAACGTGCC CCAGCTCCGG CAGTTGCAAC GCCTCTTCGG CGCCAATACC
GCGGCCATCA AGGGCCTGGC CGCGCCGATC CTGATCATCA TGGTGCTGGC CATGATGGTG
CTGCCGCTGC CGGCGTTTGC ACTCGATCTG TTCTTCACCT TCAACATCGC CACCGCGCTG
CTGGTGATGA TGGTGGCCGC CTACATGGTG CGCCCGCTCG ACTTCGCGGC CTTCCCGTCG
GTGCTGCTGC TGACCACCTT GCTGCGCCTG TCGCTCAACG TGGCGTCGAG CCGCGTGGTG
CTGATGGACG GCCACAACGG CCCGGGCGCG GCCGGCGCGG TGATCGAGAG CTTCGGCCAC
TTCCTGATCG GCGGCAACTT CGCGGTCGGC CTGATCGTGT TCGCGATCGT GGTGGTGATC
AACTTCATGG TCATCACCAA GGGCGCCGAG CGCATCGCCG AAGTCGGCGC GCGCTTCACC
CTCGACGCCA TGCCCGGCAA GCAGATGGCG ATCGACGCCG ATCTCAACGC CGGCAACATC
GACGAGAAGG AGGCCAAGCG CCGCCGCATC GAGGTGCAGG AAGAAGCCGA GTTCTTCGGC
TCGATGGACG GTGCCTCGAA ATTCGTGCGC GGCGATGCGG TCGCCGGCAT CCTGATCCTG
TTCATCAACA TCGTCGGCGG CTTCATCATC GGCATGGCCC AGCACGGCCT GGGCGCCGGC
GAGGCCGCCA GCAGCTACAT CCTGCTGGCG GTGGGCGACG CGCTGGTGGC GCAGATCCCG
GCGCTGCTGA TCTCTGTGGC CTCGGCGATG GTGGTGTCGC GCGTGGGCAA GGAGCAGGAC
GTCGGCAACC AGATCATGGG CCAGATGTTC CGCTCGCCGC AGTCGGTGGC GGTGGTGGCC
GGCGTGATCG GCCTGCTGGG CATGATCCCG GGCATGCCGC ACCTGGTGTT CCTGATGATC
GCCGGCGGCA TGGCCGCGCT GTCGCGCTGG ATGTACCGCG AGGCGAAGAA GCCCAAGCCG
GTCGAGGCGC CGGCCGATGT CGTGGCACCG GCCAACCCGA ACGCCGAAGC CAGCTGGGAC
GACCTGCTGC CGGTCGACAC GCTGGGCATG GAGGTCGGCT ACCGGCTGAT CGCGCTGGTC
GACAAGGACC GTGGCGGCGA CCTGCTCAAC CGCATCAAGG GCGTGCGCAA GAAGTTCGCG
CAGGAGGTCG GCTTCCTGCC GCCGGCGGTG CACATCCGCG ACAACCTCGA GCTCAAGCCC
AGCATGTACC GCCTGACGCT GCGTGGCGCG GTGGTGGGCG AGGGCGAGGC ATTCCCCGGC
ATGCACCTGG CGATCAACCC GGGACACGCC ACGCTCAAGC TGCAGGGCGC GACCACCACC
GATCCGGCCT TCGGCCTGCC GGCCACCTGG ATCGACGAGA GGCAGCGTGA AAGCGCCCAA
ATGGCGGGAT ACACCGTGGT TGATTCCTCG ACCGTGGTGG CCACGCATCT TTCACACTTG
ATGCAACAGC ACGCGGCTCG CCTGCTGGGC CGAACCGAAA CCCAGGCCCT CGTCGAGCAT
GTGACCAAGC TGGCTCCCAA ACTGATCGAA GACGTGGTAC CCAAGATGAT CGGCATTGCC
CCACTCCAGA AAGTGCTCCA GCTCCTGCTG GAAGAAGGCG TGCACATCCG CGACATGCGC
TCGATCATCG AGGCGCTGGC CGAGCACGCC GGCAACAACG TCGACCCGGC CGAGCTGGCG
CGCCGCCTGC GCATCGCGCT GGCCCCGGCG ATCGTGCAGC AGATCTACGG CAGCGCCCGC
GAGCTCGACG TCATCGCGAT CGAACCCGAC CTCGAGCGCC TGCTCTCCCA GGCCCTCAAC
GCCCACAACG GCGCCGTGCT CGACCCGGGC GTGGCCGACC ACCTGACCCG CGGTGCCGCC
GACGCGGCGC GCCGCCAGGA AGACCTCGGC CACCCCGCCT GCCTGCTGGT GCCCGACCCG
ATCCGCTCAC CGGTGGCGCG CCTGCTGCGC CGTGCCGCAC CGCGCCTGCG CGTGCTGGGG
CACAGCGAGA TCCCTGATAC CCATTCGATC CGCATCGGCT CGATCATCGG AGCGAACGCA
TGA
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| Protein sequence | MNLSNVPQLR QLQRLFGANT AAIKGLAAPI LIIMVLAMMV LPLPAFALDL FFTFNIATAL
LVMMVAAYMV RPLDFAAFPS VLLLTTLLRL SLNVASSRVV LMDGHNGPGA AGAVIESFGH
FLIGGNFAVG LIVFAIVVVI NFMVITKGAE RIAEVGARFT LDAMPGKQMA IDADLNAGNI
DEKEAKRRRI EVQEEAEFFG SMDGASKFVR GDAVAGILIL FINIVGGFII GMAQHGLGAG
EAASSYILLA VGDALVAQIP ALLISVASAM VVSRVGKEQD VGNQIMGQMF RSPQSVAVVA
GVIGLLGMIP GMPHLVFLMI AGGMAALSRW MYREAKKPKP VEAPADVVAP ANPNAEASWD
DLLPVDTLGM EVGYRLIALV DKDRGGDLLN RIKGVRKKFA QEVGFLPPAV HIRDNLELKP
SMYRLTLRGA VVGEGEAFPG MHLAINPGHA TLKLQGATTT DPAFGLPATW IDERQRESAQ
MAGYTVVDSS TVVATHLSHL MQQHAARLLG RTETQALVEH VTKLAPKLIE DVVPKMIGIA
PLQKVLQLLL EEGVHIRDMR SIIEALAEHA GNNVDPAELA RRLRIALAPA IVQQIYGSAR
ELDVIAIEPD LERLLSQALN AHNGAVLDPG VADHLTRGAA DAARRQEDLG HPACLLVPDP
IRSPVARLLR RAAPRLRVLG HSEIPDTHSI RIGSIIGANA
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