Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1614 |
Symbol | |
ID | 6163504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1711177 |
End bp | 1713492 |
Gene Length | 2316 bp |
Protein Length | 771 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641664368 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001790646 |
Protein GI | 171058297 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0431388 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCACC TGCCGCTGGC CGCCGGCACC GCGCTGGCCA GCACGCTGGT GATCGCCGCC TTCACGCCGG GTGTCACCGC CGACACCGGA CTGCTGGTGT GGCTGGTGAG CGTGGTGACC CTGCTGCTGA TCCACGGCCG GCACTGGTGG CAGTGGCGCC AGCGGCGGCA GGCCGGCCGC GTCTCGACCC GCACCCTCAC GGCGCTGATC GCCCATGCCG GCGTGTTCGC CACCTTGTGG GGCGCCGTGC CGGGCTGGAT GCTGGCGCAG GCCAACGCCG GCCAGCACGC CCTGCTGGCC GGCAGCCTGA CCGGCATGCT GTGCATCGGC GGCGTCACGC TGGCCGCGGT GCCGGCCGCC GCCTACGCGT ACCTGGGCGG ACTGAGCCTG AGCCTGATCG TCAGCCAGTT CATGCAGCCG AGCGCCCAGC TGGGCGCCGG CGCGGTGCAG TGGGCCGGCT GTGCCGCCGT GATGGTGGGC GGCGTGCTGA TGATGAGCCG CACCGTGCGC GCCCGCGTGC AGGCTGAGAT GCAGGCCGAA CACCAGGGCC AGCTGATCGG CCTGCTGCTG CGCGATTTCG GGGAACAGGG CAGCGACCTG CTGTGGCAGA TCGACGAACG CGGCTGCCTG TCGCAGGTCA GCCGGCGCCT GGCCGATGCG CTGGGCCGCC CGCTCGCCGA ACTGCAGGGC CGCCCGCTGC TGGAGGTGCT GACCGAACTG CAGCAGGGCC TGTCCGACAT CGACCGCGAC GCCACCCAGA TGCTGCAAAC CTGCCTGATC GAGGGCCAGC CGTTTCGCGA CGTGCTGATG CCGATGCGCG TCAAGGGCCA GCCGCGCTGG TGGTCGCTGA CCGCCAAGCC GCTGGTCAAC GAACGCGGCG TGGCGATGGG CTGGCGCGGC GTGGCGCGCG ACGTCACGCA GGCCCGCATG GCCGACCGGC GCATGGCCTG GCTGGCGCAC TTCGACACCC TCACCGGCCT GACCAACCGG GCGCACTTCC GCGTGCTGCT CGAGGCGGCC CTGCAGCAGG CCCGGTCGCC GGAACAGGGC GGCGCGGTGA TGTGCCTCGA CCTGGATCAT TTCAAGACCG TCAACGACAC CCTCGGCCAC CCGACCGGCG ACGCCCTGCT GGTGGAGGTG GCGCGCCGCC TCAAGGCCGC GGTGGGCCCC GGCGATGTCG TGGGCCGGCT CGGCGGCGAC GAGTTCGCGG TGCTGCTGCG CAACGCCGCG GACGTGCAGC AGATCAGCGC GACCGCGCAG CGCATCCTCG ACGCCCTGCG CGAGCCCTGC GCCGCGCTGG GCGCGCAGGT GCCGGTGCGC CTGAGCATAG GCATCGCGCG CTTCGCGCAG GACGGCGCCT CGGTCGACGA GCTGATGCAG CACGCCGACC TGGCGCTGTA CGACGCCAAG GCCAGCGCGC CGGGCTCGAT GAAGTTCTTC GCCCCGCGCA TGGGCGAGCA GGTGCGCCGC CGCCTGGTGC TCGAGCGCGA CCTGCGCGAG GCGATCGACA AGCAGCAGCT CTCGCTGCAC TACCAGCCCA AGGTCGACCT GCAGACCTGG GAGGTCACCG GCTTCGAGGC GCTGCTGCGT TGGCGCCACC CCGAGCACGG CAACATCCCG CCCAGCGAGT TCATCCCGGT GGCCGAGGAC TCGGGCCTGA TCCTGCCGAT CGGCGAGTGG GTGCTGACCC AGGCGTGCCA GCAGGCGGCC CGCTGGCCGG CGCCGATGCA GGTGGCGATC AACATCTCGC CGGTGCAGGT GATGGCGCAG AACCTGCCGG AAGCGGTCGG CCGCGCCCTC AAGGCCAGCG GCCTGGCGCC GCGGCGGCTC GAGCTGGAAA TCACCGAATC GGTCTTCATC AACGAGACCC GCGGCACCGT GGACCGCCTG CACGCCCTGC GCAAGGTCGG GGTGCAGATC GCGCTCGACG ACTTCGGCAC CGGCTACTCG TCGCTGGCGT ACCTGCGCCG CTTCCCGTTC GACACCCTCA AGATCGACCG CGCCTTCGTG CGCGAGGTGC TGCTCAGCCG CGACGCCCGG GCGATCGTGC GCAACATCCT GGCGCTGGCC AAGTCGCTGC GCATGTCGAC CGTGGCCGAA GGCGTCGAGG AGCCGGCCCA GGCGTCGGTG CTGGGCAACG AAGGCTGCGA TCTGGTACAG GGGTTCCTGG TGTCGCGGCC GATGCCGGCC GACGAAGTGA CCGGATTCCT GCTCGACTGG GCCAAATGCC GGCATCCGCA GCCCCCGCGC GAGGTCGTGC TGGCCAACAC CGATGTCGCC GCCCTGCCCC TGACGCAGCC GGCGATGGAC CTCTGA
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Protein sequence | MRHLPLAAGT ALASTLVIAA FTPGVTADTG LLVWLVSVVT LLLIHGRHWW QWRQRRQAGR VSTRTLTALI AHAGVFATLW GAVPGWMLAQ ANAGQHALLA GSLTGMLCIG GVTLAAVPAA AYAYLGGLSL SLIVSQFMQP SAQLGAGAVQ WAGCAAVMVG GVLMMSRTVR ARVQAEMQAE HQGQLIGLLL RDFGEQGSDL LWQIDERGCL SQVSRRLADA LGRPLAELQG RPLLEVLTEL QQGLSDIDRD ATQMLQTCLI EGQPFRDVLM PMRVKGQPRW WSLTAKPLVN ERGVAMGWRG VARDVTQARM ADRRMAWLAH FDTLTGLTNR AHFRVLLEAA LQQARSPEQG GAVMCLDLDH FKTVNDTLGH PTGDALLVEV ARRLKAAVGP GDVVGRLGGD EFAVLLRNAA DVQQISATAQ RILDALREPC AALGAQVPVR LSIGIARFAQ DGASVDELMQ HADLALYDAK ASAPGSMKFF APRMGEQVRR RLVLERDLRE AIDKQQLSLH YQPKVDLQTW EVTGFEALLR WRHPEHGNIP PSEFIPVAED SGLILPIGEW VLTQACQQAA RWPAPMQVAI NISPVQVMAQ NLPEAVGRAL KASGLAPRRL ELEITESVFI NETRGTVDRL HALRKVGVQI ALDDFGTGYS SLAYLRRFPF DTLKIDRAFV REVLLSRDAR AIVRNILALA KSLRMSTVAE GVEEPAQASV LGNEGCDLVQ GFLVSRPMPA DEVTGFLLDW AKCRHPQPPR EVVLANTDVA ALPLTQPAMD L
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