Gene Lcho_1605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1605 
Symbol 
ID6162047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1705117 
End bp1706274 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content71% 
IMG OID641664359 
Product2-alkenal reductase 
Protein accessionYP_001790637 
Protein GI171058288 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00436797 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGCCGTGG CAGTGGTTTT CGTGCTCGCC ACCTTCAAGC CGGCTTGGCT CGGCGGCTGG 
TCGGAGTTTG GCACGCGAGA CCGCGGCGGG CCGGCGGTCC AGGTGCTGAT GGCACCGGCG
CCCGCTGCCG TGCCGCAGGC CGCATCGGGC GTCGGCGGCG TGCAGAGCCT GGCCTACGCG
GCGCGGCGCG CGGCGCCGTC GGTGGTCAGC GTGGTGACCT CCGGCAGCCG GGGGCGCGGC
GAGGGCTCAC CACACGGCAG CGAGCCGTGG TTCCGGCGCT TCTTCGGCGA GCAGGATCAG
CCGGCCAACG GCATGGGTTC GGCGGTGATC GTCTCGACCG ACGGCTATCT GCTCACCAAC
AACCACGTCA TCGAAGGCGC CGAACAGATC GAGGTGGTGC TCGCGGATGG CCGCCGTTCG
GTGGCCAAGG TGATCGGCAG CGATCCCGAC AGCGACCTGG CGGTCCTCAA GATCGACGGC
CGTGACTTGC CCGCCGTCAC CTTCGGCGTG GCCGACGCGC TGCAGGTCGG CGACGTGGTG
CTGGCGATCG GCAACCCGTT CAATGTCGGC CAGACCGTCA CCTCGGGCAT CGTCAGCGCG
CTCGGCCGCA CCGGGCTGGG CCTCAATACC TTCGAGAACT TCATCCAGAC CGATGCCGCG
ATCAATCCCG GCAACTCGGG CGGTGCGCTG GTCGATGCCG GCGGCCAGCT GCTGGGCATC
AACACGGCGA TCTATTCGCG CTCGGGCGGC AGCATGGGCA TCGGTTTTGC CATCCCGGTG
ACGACCGCGC GCCAGGTGAT GGACGGCCTG ATCCGCAACG GCGTGGTCAC GCGCGGCTGG
ATCGGCGTGC AGCCGCGCGA TCTGACACCC GAGCTGGCCG AGTCGATCAA GAGCCGGGCG
ACCCAGGGCG TGCTGATCGC CGGTGTCCTG CAGGACGGCC CGGCCAGCGA CGCCGGCATG
TTGCCGGGCG ACGTGGTGCT GCGCATCGCC GGCCATCCGG TGGCCAACAC CGCGCAGCTG
CTCAACGAGG TGGCTGCGCT GGCGCCGCAG AGCCGCACCA GCGTGTCGAT CCTGCGTGGC
GATCAGGCGC TCGATCTGCA GGTCAAGGTG GCGCAACGGC CCAGTCTGCG GCCACGCCAG
TCCGACGACC AGCGCTGA
 
Protein sequence
MAVAVVFVLA TFKPAWLGGW SEFGTRDRGG PAVQVLMAPA PAAVPQAASG VGGVQSLAYA 
ARRAAPSVVS VVTSGSRGRG EGSPHGSEPW FRRFFGEQDQ PANGMGSAVI VSTDGYLLTN
NHVIEGAEQI EVVLADGRRS VAKVIGSDPD SDLAVLKIDG RDLPAVTFGV ADALQVGDVV
LAIGNPFNVG QTVTSGIVSA LGRTGLGLNT FENFIQTDAA INPGNSGGAL VDAGGQLLGI
NTAIYSRSGG SMGIGFAIPV TTARQVMDGL IRNGVVTRGW IGVQPRDLTP ELAESIKSRA
TQGVLIAGVL QDGPASDAGM LPGDVVLRIA GHPVANTAQL LNEVAALAPQ SRTSVSILRG
DQALDLQVKV AQRPSLRPRQ SDDQR