Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1595 |
Symbol | |
ID | 6162614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1692208 |
End bp | 1692837 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641664349 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001790627 |
Protein GI | 171058278 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00167261 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTCGCG TGATGCTCTG CGACGACCAT GCCCTGATCC GACGCGGCAT CCGCGACACG CTGGCCGAAC AGCCCGACAT GGAAGTGGTC GGCGAAGCCG GCGAATACGG CGAGTTGCGC GCGCTCCTGC GCAAGCAGAC CTGCGACGTG CTGGTGCTCG ACATCAACAT GCCCGGGCGC AGCGGCCTCG ACGTGCTGCA TGCGCTCAAG GAAGAAGGCT CGCCGATCCG GGTGCTGATC GTCTCGATGT ACCCCGAAGA CCAGTACGCC CTGCGGGCGC TGAAGGCCGG CGCCTACGGC TACGTCAACA AGGGCAGCGA CCCGGCACAG ATCGTCGCCG CGGCGCGCAT GGTGGCGCAG GGGCGCAAGT ACATCACGGC CGAGATGGCG CAGATGCTGG TCGAGAACCT CACCACGCCC TCCAGCGAGG CCGCGCACGA CAAGCTTTCC GACCGCGAAT TGCAGACCTT GACGATGATC GCCTCGGGCA AGCGGCTGTC AGACATCGCC GAGGAGCTGA CGCTCAGCCC CAAGACCGTC AGCGTCTACC GCGCGCGGGT ACTCGAGAAG CTGGGCCTGG CCAACAACTC CGAGCTGACG GTCTACGCGA TCCGCAACGG CCTGGTCTGA
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Protein sequence | MIRVMLCDDH ALIRRGIRDT LAEQPDMEVV GEAGEYGELR ALLRKQTCDV LVLDINMPGR SGLDVLHALK EEGSPIRVLI VSMYPEDQYA LRALKAGAYG YVNKGSDPAQ IVAAARMVAQ GRKYITAEMA QMLVENLTTP SSEAAHDKLS DRELQTLTMI ASGKRLSDIA EELTLSPKTV SVYRARVLEK LGLANNSELT VYAIRNGLV
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