Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1539 |
Symbol | |
ID | 6161298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1630110 |
End bp | 1632155 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641664294 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001790572 |
Protein GI | 171058223 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0594257 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAGAC CTCGGCCGGC TTGGGTCGCA CGCTTGCGCA GCTGGGCCGG TTCGCTGAAG TTGCGGCTGG CGCTGGCCAG CGGCGTGATC ATCGCCCTGA GCGTGGTCGT GGTGTCGAGC CTGATGCTCG AACGCGGTGG CCGCCACACC GAGCAGGCCA TCCTCGACAG CGAAGCGGCC AATGCCGAGC ACCTGGCCAC CGTGCTGCGC CAGCGCATCG TGCTGCTGCA GGTCGCATTG CGGGCGGCGG CGGCACCGGT CGACGCCACC ATCCTCACCG ATCCGGCCGC CCAGGTGCGC TACATGCAGC AGCGCCAGGT GCTGGCCACG CTGTTCGCCA ACATCGCGCT GGTGTCGGCA GACGGCCGCG TGCTGGCCGT GCGCGACGGT TCGGGCATTC GCCAGGACGG CCTCTCGGTG GCCGATCGCC CCTACTTCCG GCAGACCGTG CAGCTGGGCC GGCCGATCGT CTCCGAGCCG ATGATCGGGC GGCTGTCGCG CGAGCCCGTC GTCGTGCTGA CGATGCCGGT CGCGTCGGTC GGCCCGACCG GCGGTGCCGT TCTGCTCGGC ACGCTGCGCC TGAGTTCCCA TGACCTGCTG GCCGATCTGG CCGCCACCGG CTCCGATGGC CGCACGGTGG TGCAGACGGT CGTCGCCGAT GCGTCGGGCC TGATCCTGGC GCACCCCGAC CCCGCGATGG TGATGCGGCC GGTCGAATCG GTGCCCGGCC TGCAGTCGAC GGTGGCGCAG TGGGTGCGAT CGGGTCGGCC GATCGAGCCG CTGCCCGACG CCGTCAACGA GGCCGGCTAC GTGGTGGCCA AGGCCGGTGT GGCGGGGGCC GACTGGATGG TGTTCCGGGT GGTGTCGAGC GAGGCGCTGC TGGGCGGCTT CCAGCTCGCC GTGCGCGAGG CCCTCGGCTA CGCCGCCGGC GTGGCGCTGC TGGCGACGGG CCTGCTGTGG TGGTGGCTGG TGCGGCTGCT GCGTCCGCTC GACCGCCTCG AAGAGCGCGC CCGTGCCCTC GGCCCCGACG GCCTGCCGCT CGAGGAGGGC TGGCCCGATG CGCCCGGCGA GGTCGGCGAA CTCGAGCTCG CGCTGCGCGA TTCGCTGCGT GCGCAGGCCC GTGTCGAAGC CAGCAACGCC TCGCTGCTCG ACAAGCTGCG CTCGGTGATG AGCACCGCGC CGATGGGACT GGCCTTCACG CGGGCGCGCC ATTTCGAGGT GGTCAGCGAC GAGTGGTGCC GCCTGCTCGG TTATCCCGTC GGGGCGCTGG TGGGCGAGCC GGCACGGCTG ATCTATGCCT CCGAGGCCGA TTACGAACAG GTCGGCCCGG ATGTGGCCGA TGCCTTCGCC GCGGGTCGGC CGTTTGTCGG CGACTTCGAA TTCCTGCGCC GCGACGGCGG TCGTTTCATC GGCGAACTGC ACGGCCGTCC GGTCAACGTG AGCGATGCGG CAGCCGGCAC GATCTGGCTG CTGCGCGACG TCACCGACGA GCGCGAAGCC CATCGCGAAC TGGCCTGGAC CGCCAACCAC GACGCCCTGA CCGGGCTGGT CAACCGGCGC CACTTCGAGC ATGAACTGGC GCGCCTGCTC GCCCACATGC AGCCGGGCAT GACGGCGGCG GCGCTGTTCA TCGACCTGGA CCGCTTCAAG CAGGTCAACG ACAGCGCCGG CCACGCCGCC GGCGACCAGG TCCTGCGCGA GGTGGCGCAG GCGCTCGCAG CCAGCGTGCG GCGCGACGAA CTGGTGGCGC GACTGGGTGG CGACGAGTTC GCGATCGTGC TCGGTGCCTG CGACCTGGCC GCGGCCGAAC GCATCGCGCA CAAGGTGCGT CTGGCGGTCG AGCAGGTGAT CGTGCGCTGG GGCGAACACG AGCTGAGCGT GGGTGCGAGT GTCGGCGTGG TGGAGATCCC GGCCGGCGGC GTCGACGTGG CCGGCGTGCT CAATGGCGCC GATCTGGCCT GCTACGAGGC CAAGCAGGCC GGCCGCAACG CCGTGCGTAC CGGCAGTCTG CCGTCCTTGC GGCTGGTCAC CAGCCGTCCC GGATGA
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Protein sequence | MIRPRPAWVA RLRSWAGSLK LRLALASGVI IALSVVVVSS LMLERGGRHT EQAILDSEAA NAEHLATVLR QRIVLLQVAL RAAAAPVDAT ILTDPAAQVR YMQQRQVLAT LFANIALVSA DGRVLAVRDG SGIRQDGLSV ADRPYFRQTV QLGRPIVSEP MIGRLSREPV VVLTMPVASV GPTGGAVLLG TLRLSSHDLL ADLAATGSDG RTVVQTVVAD ASGLILAHPD PAMVMRPVES VPGLQSTVAQ WVRSGRPIEP LPDAVNEAGY VVAKAGVAGA DWMVFRVVSS EALLGGFQLA VREALGYAAG VALLATGLLW WWLVRLLRPL DRLEERARAL GPDGLPLEEG WPDAPGEVGE LELALRDSLR AQARVEASNA SLLDKLRSVM STAPMGLAFT RARHFEVVSD EWCRLLGYPV GALVGEPARL IYASEADYEQ VGPDVADAFA AGRPFVGDFE FLRRDGGRFI GELHGRPVNV SDAAAGTIWL LRDVTDEREA HRELAWTANH DALTGLVNRR HFEHELARLL AHMQPGMTAA ALFIDLDRFK QVNDSAGHAA GDQVLREVAQ ALAASVRRDE LVARLGGDEF AIVLGACDLA AAERIAHKVR LAVEQVIVRW GEHELSVGAS VGVVEIPAGG VDVAGVLNGA DLACYEAKQA GRNAVRTGSL PSLRLVTSRP G
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