Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1506 |
Symbol | |
ID | 6161396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1590110 |
End bp | 1591468 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641664261 |
Product | NADH-quinone oxidoreductase, F subunit |
Protein accession | YP_001790539 |
Protein GI | 171058190 |
COG category | [C] Energy production and conversion |
COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
TIGRFAM ID | [TIGR01959] NADH-quinone oxidoreductase, F subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.00816775 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGCTCG ATCTCTCCCA AGTGCTGGCC GGCTTCCAGG CCACCGGCAC CGAAACCTGC TTTCACGACC GCCACATCAA CTCGCAGATC TATGCGGGCC TGAACGGCAA GAACTGGCGC CTGGCCGACT ACGAAGCGCG TGGCGGCTAC CAGGCGCTGC GCAAGATCCT CGGCGCCGAC GGCGGCGAGG GCATGACCGC CGATCAGGTG ATCGCCGAGG TCAAGGGTTC GGGTCTGCGC GGCCGGGGCG GTGCGGGTTT CCCGACCGGC CTCAAGTGGA GTTTCATGCC GCGCGCCCTG CCGGTGCAGA AGTACCTGGT CTGCAACTCC GACGAGGGTG AGCCGGGCAC GTGCAAGGAT CGCGACATCC TGCGCTACAA CCCGCACATC GTCATCGAAG GCATGATCAT CGCGGCCTAC GCGATGGGCA TCACGGTCGG CTACAACTAC ATACACGGCG AGATCTTCGA CGCCTACGAG CGTTTCGAAG AGGCGCTCGA GGAAGCGCGT GCCGCCGGCT ATCTGGGCAA CCAGATCCTG GGCAGCAGGC ACACCTTCCA GCTGCACGCC TTCCACGGTT TCGGCGCCTA CATCTGCGGT GAAGAGACCG CGCTGCTCGA ATCGCTCGAA GGCAAGAAGG GCCAGCCGCG CTTCAAGCCG CCGTTCCCGG CCAGCTTCGG CCTGTACGGC AAGCCGACCA CGATCAACAA CACCGAAACC TTCGCGGCGG TGCCCTGGAT CATCCGCAAC GGCGGTCCGG CCTACCTCGA ATGCGGCAAG CCCAACAACG GCGGCACCAA GATCTTCTCG ATGGTCGGTG ACGTCGAACG TCCGGGCAAC TACGAGATCC CGATGGGCAC GCCGTTCAGC ACGCTGCTGG AGCTCGCCGG TGGCGTCAAG GGTGGCAAGA AGCTCAAGGC CGTGATCCCT GGCGGATCGT CGTCGCCGGT GCTGCCGGCC GACGTCATGA TGGCCTGCAC GATGGACTAT GACTCCATCA GCAAGGCCGG TTCGATGCTC GGTTCGGGCG CCGTGATCGT GATGGACGAC ACCCGCTGCA TGGTCAAGAG CCTGCTGCGC CTGTCGTACT TCTACAGCCA CGAAAGCTGC GGCCAGTGCA CGCCGTGCCG CGAAGGCACC GGCTGGCTGT GGCGCATCGT CGACCGCATC GAACACGGCC ATGGCCGTGC CGAAGACCTG GCGCTGCTCG ACAACGTGGC CGAGAACATC ATGGGTCGCA CCATCTGCGC CCTCGGCGAT GCCGCCGCGA TGCCCGTGCG CGCGATGCTC AAGCATTTCC GCCACGAGTT CGTCCACCAC ATCGAGCACA AGACCTGCGT GGTCCCGGCT TACGTCTGA
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Protein sequence | MTLDLSQVLA GFQATGTETC FHDRHINSQI YAGLNGKNWR LADYEARGGY QALRKILGAD GGEGMTADQV IAEVKGSGLR GRGGAGFPTG LKWSFMPRAL PVQKYLVCNS DEGEPGTCKD RDILRYNPHI VIEGMIIAAY AMGITVGYNY IHGEIFDAYE RFEEALEEAR AAGYLGNQIL GSRHTFQLHA FHGFGAYICG EETALLESLE GKKGQPRFKP PFPASFGLYG KPTTINNTET FAAVPWIIRN GGPAYLECGK PNNGGTKIFS MVGDVERPGN YEIPMGTPFS TLLELAGGVK GGKKLKAVIP GGSSSPVLPA DVMMACTMDY DSISKAGSML GSGAVIVMDD TRCMVKSLLR LSYFYSHESC GQCTPCREGT GWLWRIVDRI EHGHGRAEDL ALLDNVAENI MGRTICALGD AAAMPVRAML KHFRHEFVHH IEHKTCVVPA YV
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