Gene Lcho_1503 details

Gene Information

• Locus tag: Lcho_1503
• ID: 6162438
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1587698
• End bp: 1588297
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 641664258
• Product: NADH (or F420H2) dehydrogenase, subunit C
• Protein accession: YP_001790536
• Protein GI: 171058187
• COG category: [C] Energy production and conversion
• COG ID: [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit
• TIGRFAM ID: [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 24
• Fosmid unclonability p-value: 0.00949077
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGACTCAAA AACTGGACAC CCTGCAGGCT GCGATCGAGC GTGTGATCGG CGATCGCATC 
GTGCATCTCG TGCGCGATCG TGGCGAGCTC ACCTTGACCG TCAAGGCAAC TGACTACGCT 
GCCATCGGCA AGACGCTGCG TGATCATCCG GACCTCGGAT TCGAGCAGCT GATCGACATC 
TGCGGCGTCG ACTACAGCGG CTACAAGGAC GGTGGTTACG AGGGCCTGCG TTATGCGGCG 
GTCTCGCACC TGCTGTCGGT GCAGCACAAC TGGCGCCTGC GCCTGAAGGT GTTCGCGCCC 
GACGACGACT TCCCGCTGGT CGCTTCGCTC ACGCCGATCT GGAGCGGTGC CAACTGGTTC 
GAGCGCGAAG CCTTCGACAT GTACGGGATC GTCTTCGACG GTCACACCGA CCTGCGTCGC 
ATCCTGACCG ACTATGGCTT CATCGGGCAT CCGATGCGCA AGGACTTCCC GGTCACCGGT 
CATGTCGAGA TGCGCTACGA CCCCGAGCAG AAGCGCGTGA TCTACCAGCC GGTCTCGATC 
GAGCCGCGCG AGATCACGCC GCGCATCATC CGCGAAGACA ACTACGGCGG CCTGCACTAA 

 

Protein sequence

MTQKLDTLQA AIERVIGDRI VHLVRDRGEL TLTVKATDYA AIGKTLRDHP DLGFEQLIDI 
CGVDYSGYKD GGYEGLRYAA VSHLLSVQHN WRLRLKVFAP DDDFPLVASL TPIWSGANWF 
EREAFDMYGI VFDGHTDLRR ILTDYGFIGH PMRKDFPVTG HVEMRYDPEQ KRVIYQPVSI 
EPREITPRII REDNYGGLH