| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1484 |
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| Symbol | |
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| ID | 6162222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1569259 |
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| End bp | 1570368 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641664238 |
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| Product | ApbE family lipoprotein |
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| Protein accession | YP_001790517 |
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| Protein GI | 171058168 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0759035 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCATT TCCAGAAACC CGATCTCCCA CCGGCGGCGG TTGCCGACGC CCTCGTCGAT
CCGGGCCGGC GGCGTTTCGC CCGCAGGCTG GTGACGGGCG CCACCTTGGC CGGTTGCGGC
TGGCTGGCCG CGCCGGTGCT GGCTGCCGGC GAGGCACCGG CCCTGCGCGG GGGCGCGGCG
CTGATGGGCA CGCGGGTCGA CATCAGCCTC GACGGCGCCG ACCCGGCCCG CCTGCGGCAG
GCGCTGCAGG CCGCGCTGGC CGAGATGCAG CGGCTGGCCG ACATGATGTC GCGCTACCGC
GACGACAACC CGGTGGCGGC GCTGCAGGCG GCGGCCGGCC GCCACCCGGT GGTGCTGCCG
CCGGAAATGT TCGCGGTGCT GAAAAAGGCC GAATCGATAT CCCGACAAAC TGGCGGGGCA
TTCGACGTGA CCGTCGGCGC CCTGTCGGGC TGGAGATTCG ATGACCCGCG CGCGGATATT
CCGTCAGCCC GGCAAATTGC CCGCGAGTTG CGGCATGTCG ATCATCGCCA ATTGATACTC
GACGAAGCCG CCGGCAGCGC ATACCTGCGC GAGCGCGGCA TGCGCGTCGA TCTGGGCGGC
ATCGCCAAGC TGCCGATCCT GCAGGCCGGC ATGGACGTGC TCAAGCGCCA CGGCGTGGCC
GACGCGATGA TCAACGGCGG CGGCGACGTG CTGGTGTCCG GCCGGTTGCA CGGCCGGCCC
TGGCGCATCG GCGTGCGCGA TCCGGCGGCA CCCGAGCGCC TGCTGGCGCT GCTGCCGATG
AGCGACGGCA TCGTCGCCTC GTCGGGCGAC TACGAGCGCT GCGTGGTGCG CGACGGCCGC
CGCTACCACC ACGTCATCGA CCCGCGTACC GGCTACCCGA GCGAGCAGGT GCGCGGTGTC
ACGCTGGTCG GCCGCAGCGT GGCCGAACTC AACGGCCTGG GCGCGGCGGC GATGGTGCTG
GGGCCGGCGG CCGGCGCGGC CCTGCTGTCG CGTCAGCCGG GACGCCAGGC GCTGATGGTC
GGCCGCGACG GCTCGCTGTG GGTGTCGCCT GCGCTTGCGG GGCGGCTGCT GCCGCCGCCG
GGTGAGCAGC AGGTCCGAGG CCTGGGGTGA
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| Protein sequence | MPHFQKPDLP PAAVADALVD PGRRRFARRL VTGATLAGCG WLAAPVLAAG EAPALRGGAA
LMGTRVDISL DGADPARLRQ ALQAALAEMQ RLADMMSRYR DDNPVAALQA AAGRHPVVLP
PEMFAVLKKA ESISRQTGGA FDVTVGALSG WRFDDPRADI PSARQIAREL RHVDHRQLIL
DEAAGSAYLR ERGMRVDLGG IAKLPILQAG MDVLKRHGVA DAMINGGGDV LVSGRLHGRP
WRIGVRDPAA PERLLALLPM SDGIVASSGD YERCVVRDGR RYHHVIDPRT GYPSEQVRGV
TLVGRSVAEL NGLGAAAMVL GPAAGAALLS RQPGRQALMV GRDGSLWVSP ALAGRLLPPP
GEQQVRGLG
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