Gene Lcho_1464 details

Gene Information

• Locus tag: Lcho_1464
• ID: 6163318
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1544049
• End bp: 1547456
• Gene Length: 3408 bp
• Protein Length: 1135 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641664218
• Product: multi-sensor hybrid histidine kinase
• Protein accession: YP_001790497
• Protein GI: 171058148
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 0.396763
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACTCGG CCACACCCTC GGGCCCGCTG CTGCAGCCCG GGCGCTCCAA CGGCCAGCGC 
GCGGGCCGGA CGCTGCTCCG GCTGGCCGCG GGCGTGATCC TGATCTCCGG CGTGCTGGTG 
TTCCTGACCT TGCTCTACCT GCGCGGACAG GCGATCGATG CCGGCCGGCG CACGACCGAA 
TCGTTCGCCC GCATCATCGA GGAGCAGACC ACCCGCACCC TGCAGGCCGC CGATCAGCGG 
CTGGAACTGG CATCGGTGGG CATCGCCCAG CTGGGCGCCA CGGGCACGCT CGACGAGCCG 
TCGGCGCGGG TGCTCTTGCG CGAGCAGATC AGGCACCTGC CGTTCCTGCG CGCCATGTGG 
GTCATGGATG CCTCGGGCCG GATCGTCTAC GACTCGGACA TCGGCAACAT CGGCGTCAAC 
CTGGGCGACC GGGCGTACTT CCAGATCTAC CGCCAGCAGC CGCAAACCAC CTTCTACGTG 
GGCACGCCGG TGCGCAGCCG CAGCACCGGC AGCTGGCTGA TCAGCGTCTC GCGGCCGCGC 
TACACACGCG GCGGCGTGTT CGACGGCATC GTCGTCGCGG CCCTGGAGCC GTCCTACTTC 
GACCGGCTGT GGCACTCGGT CGACGTCGGC GCCGGCGGCT CGACCGCGCT GCTGCGCAGC 
GACGGCACGC TGATGATGCG CAGCCCGTTC GATTCGTCGA TGATGGGCAA GACCGTCTCG 
GACCTGCTCG TCATCGAGCC GCAGCGGGCC GGCCAGCGCG CCGGTCGTTT CCAGAAGCGC 
AGCGCCTTCG ACGGCATCGA GCGCGACTTC GCCTACCGCG TCCTGTCGAC CCAGCCCGAG 
TTCGTGGTGG TGGTGGGCCG ATCCGTCTCG CGCACGCTGC TGCCCTGGCG CGACATGGCG 
CTGCTGGTGA CGGCGATCTG GGCGGTCGGC TCGCTGGCGC TGGCGATCCT GTGCGCCTAC 
CTGGCGCGTG CCTGGCGGCG CGTCGCCGAC GAGGACGTCC GGGCCCAGCA GCTCGCCCAG 
CGCCTGACCA TCGCCACCGA CGTGGCCTCG ATCGGCGTGT GGGACTGGGA TCTCGCGGCC 
AACCGGTGGT TTGCCACACC GACTTTCTTC TCGATGCTCG GCGACCCCCC GGATACCCCG 
CCGGTGCACG ACGAGCGATG GATCGAGCGG GTCCATCCCG ACGACCGCCC GCGCGTCGCG 
GCGATCACCA CGGCCGCGAT CGCCGGGGTG GCCGATGCGC CCTACGACTA CGAGGCCCGG 
CTGCGCCATG CCGACGGCTC GTATCGATGG TTCCAGGTGC TCGGCCGCGT GATCGCGCGC 
GATCCGAGCG GCCAGGCCCT GCGGCTGATG GGCATCCAGG TCGACGTCAC CGGCCGCAGG 
CTGGCCGCCG AGGAGCTGCA GCGCCTGAAT CGAACCCTGC GCGTCCTGAG CGCCACCAGC 
CTGGCGCTGG TCAAGACCCA CGATGAACAG GCCTACCTCG CCGAGGTGTG CCGCGCCGTG 
GTCGAGGCCG GCGGCTATCT GATGACCTGG ATCGGCTATG CCGAAGACGA CCTCGACAAG 
AGCGTGCGAT GCGTCTCTCA GGCCGGCGAC TCGCACGGCT ACCTGCAGCG CATCCGGATT 
TCGTGGGACG GGCGCCTGGC CATCGGGCAG GGGCCGACGG GCACCGCCAT CCGCACCGGC 
GTCACGCAGG TCAACCAGGA CATCCTGACC CATCCGAAGA TGCTGCCGTG GCGTGAAGCG 
GCGCTCGAGT CCGGCTATCA GTCGAGCATC GCGCTGCCCC TGGGCAACGA GCAGCGCACC 
TTCGGCGCGC TCACCCTCTA TGCGGTGCAG CCCGACGCCT TCAGCGCCCA GGAGGTCGGG 
CTGCTCGAGG AACTGGCCCG CAACGTGGCC TTCGGCATCG AGTCGTTCCG CGCCCGCACC 
CAGCGCGACG CCGCCGAGGG CGCCAACCGC GCCAAGAGCG CCTTCCTGGC CAACATGAGC 
CACGAGATCC GCACGCCGAT GAACGCCATC ATCGGCCTGA ACTACCTGGT GCGGCGCTCG 
GGCGTCACGC CGGAGCAGGC GGCGCGGCTC GAGAAGGTCG ACAGCGCCTG CCAGCACCTG 
CTGTCGATCA TCAACGACAT CCTCGACCTC TCCAAGATCG AGGCCGGTCG GGTGCAGCTG 
GAGTGCACCC ACTTCCGCCT CGGCGACATC ATCGACAACG TGCAGTCGAT CATCGCCGAG 
CCCGCCCGCG ACAAGGGCCT GGCCATCGAC GTCAGCGGCG ACGCGCAGGC GCTGTGGCTG 
CGCGGCGACC CGACCCGCCT GCGCCAGGCC CTGCTCAACT ACGCCAGCAA CGCGGTGAAG 
TTCACCGACA AGGGCAGCAT CAGCCTGCGT GCCGAACTGC TGCAGGACGG TGGTGACGAA 
CTGCTGCTCG GTTTCTCGGT CAAGGACACC GGCATCGGCA TCGAGCCCGA ACAGATCGGT 
CGCCTGTTCC AGGCCTTCGA ACAGGCCGAT GTCTCGACCA CGCGCAAGTA CGGCGGCACG 
GGGCTCGGCC TCGCCATCAC GCAGCGGCTG GTGCGCCTGA TGGGCGGTGA GGTCGGGGTC 
GACAGCACGC CGGGCCAGGG CAGCCACTTC TGGTTCACGG TGCGGCTGCA GCGCGGCCAC 
AGCGTGATGC CTGCTGCGCC GGCCGACGAG GCGCTGCGGT CGGTCGAATC GCGCCTGCTG 
CAGGAGCACG CCGGCGCGCG CATCCTGCTG GCCGAGGACA ACGACGTCAG CCGCGAGGTC 
GCGGTGGCGA TCCTGCACGG CGTCGGCCTG CTGGTGGACA CCGCCCGCGA TGGCCGCGAG 
GCCGTCGCGC TGGCACAGGC CGGCGCGTAT GACGTGGTGC TGATGGACAT GCAGATGCCG 
GCGCTGGACG GGCTCGAAGC CACCCTCGCG ATCCGTGCGC TGCCAGGCTG GGACAGCACG 
CCGATCCTGG CACTGACGGC CAACGCCTTC GACGACGACC GGCGCGCCTG CGAGGCCGCG 
GGCATGAACG ACTTCATCGC CAAGCCCATC GATGCCGATG CGCTGTACGC GACCTTGCTG 
AAATGGCTGG TGCGCCGCGC CGCGCCGAAG GACCGCGCCG GTGGGGCGCC GGAACAGCCC 
CGTCACACCG GGTTCGCCGC TGGCGAGCCG CTGTTGCCAC CCGCGGCCGA CGCGGTGGCC 
GCCGCGCACG CCGACGCCCA CGCACCGGTC GATCGCGAGC AGGTCGCCGC GGTGTTGAGC 
GAGCTCGACG CCCTGCTGGA AATGGGTGAC ACCACCGCCA TCGTCGTGCT GAACCAGCAT 
GCCGACCTGC TGCGTGCGGC CTTCGGCGCC GCCAGCGAAG CGCTCGAGCG GCAGATCCGG 
CAGTTCGCTT TCGACCGAGC GCGGGTGACG CTGCGGGCGC TGCGCTAG 

 

Protein sequence

MNSATPSGPL LQPGRSNGQR AGRTLLRLAA GVILISGVLV FLTLLYLRGQ AIDAGRRTTE 
SFARIIEEQT TRTLQAADQR LELASVGIAQ LGATGTLDEP SARVLLREQI RHLPFLRAMW 
VMDASGRIVY DSDIGNIGVN LGDRAYFQIY RQQPQTTFYV GTPVRSRSTG SWLISVSRPR 
YTRGGVFDGI VVAALEPSYF DRLWHSVDVG AGGSTALLRS DGTLMMRSPF DSSMMGKTVS 
DLLVIEPQRA GQRAGRFQKR SAFDGIERDF AYRVLSTQPE FVVVVGRSVS RTLLPWRDMA 
LLVTAIWAVG SLALAILCAY LARAWRRVAD EDVRAQQLAQ RLTIATDVAS IGVWDWDLAA 
NRWFATPTFF SMLGDPPDTP PVHDERWIER VHPDDRPRVA AITTAAIAGV ADAPYDYEAR 
LRHADGSYRW FQVLGRVIAR DPSGQALRLM GIQVDVTGRR LAAEELQRLN RTLRVLSATS 
LALVKTHDEQ AYLAEVCRAV VEAGGYLMTW IGYAEDDLDK SVRCVSQAGD SHGYLQRIRI 
SWDGRLAIGQ GPTGTAIRTG VTQVNQDILT HPKMLPWREA ALESGYQSSI ALPLGNEQRT 
FGALTLYAVQ PDAFSAQEVG LLEELARNVA FGIESFRART QRDAAEGANR AKSAFLANMS 
HEIRTPMNAI IGLNYLVRRS GVTPEQAARL EKVDSACQHL LSIINDILDL SKIEAGRVQL 
ECTHFRLGDI IDNVQSIIAE PARDKGLAID VSGDAQALWL RGDPTRLRQA LLNYASNAVK 
FTDKGSISLR AELLQDGGDE LLLGFSVKDT GIGIEPEQIG RLFQAFEQAD VSTTRKYGGT 
GLGLAITQRL VRLMGGEVGV DSTPGQGSHF WFTVRLQRGH SVMPAAPADE ALRSVESRLL 
QEHAGARILL AEDNDVSREV AVAILHGVGL LVDTARDGRE AVALAQAGAY DVVLMDMQMP 
ALDGLEATLA IRALPGWDST PILALTANAF DDDRRACEAA GMNDFIAKPI DADALYATLL 
KWLVRRAAPK DRAGGAPEQP RHTGFAAGEP LLPPAADAVA AAHADAHAPV DREQVAAVLS 
ELDALLEMGD TTAIVVLNQH ADLLRAAFGA ASEALERQIR QFAFDRARVT LRALR