Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1438 |
Symbol | |
ID | 6159845 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1517253 |
End bp | 1518269 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641664192 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_001790471 |
Protein GI | 171058122 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.597094 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATGG TTCGCCGCTG CATTTCTCTT TCGCTTCTGA CCGCTGCGTT GTTCGCGTCC GGCCTGAGCC ACGCCGCCGA CATCGAGACC CGCACCATCA AGTTCCCCTC GGCCAGCAAC AAGGGCCATC CGCAGGTGAT CGGGGTCGAG AAGTTCGCCG AACTGGTCGC CCAGAAGAGC GGCGGCAAGC TGAGCGTCAA GCCTTTCCCC GGCGGCACGC TGGGGCCGGA TCTGCAGACG GTCTCGGCCA TGCAGGGCGG CACGATGGAG ATGACGGTGA TGAACGCCAG CCTGCTGGCC GGCAACGCCA AGGAGATGGC GATCTTCGAC TTCCCGTTCA TGTTCAACAA CACGCGTGAG GCCGACGCCA TCGCCGACGG CCCGATCGGC CAGAAGCTGC TCGACAAGCT GCAGGAGCGC GGTCTGGTCG GCCTGGCGTA CTGGGACCTG GGCTTTCGCC AGATGCACAC GCTCAAGCGT CCGATCGCCA AGGCCGACGA CTTCAAGGGC CTGAAGATGC GCGTGATCCC GACGCCGATC TACGTCGACT TCATGAAGGC GCTGGGCGCC TCGCCGGTGC CGATGCCCTT CACCGAGACC TACACCGCGC TGGAGCAGGG GGCGATCGAC GGCATGACCA ATCCGCTGCT CAACATCCTC GACGGCAAGT ACAACGAGGT CTCCAAGCAC CTGACGATCA CCAACCACAT GTACACGCCG CAGGCGGTGA TCGTGAGCAA GAAGTTCTGG GACAAGCTCT CGCCGGTCGA GCAGAAGATC CTGCGTGACG CCGCGATGGA AACGGCGGTG TTCCAGCGCA AGGTGGCGCG TGACGAAGCG GCGAAGGTGC TGGGTGAACT CAAGAAGCTC GGCATGACCG TGCACGAACT GCCGCCGGAA GAACTCGCCA AGATGCGCGA GCGTGCCAAG CCGGTGATCG AGAAGTACAC CAAGGAACTC GGCCCGGTGG TGCAGGAGAT GTACGCGGCG GTCGAGAAGG TTCGCGCAGC GAAGTGA
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Protein sequence | MNMVRRCISL SLLTAALFAS GLSHAADIET RTIKFPSASN KGHPQVIGVE KFAELVAQKS GGKLSVKPFP GGTLGPDLQT VSAMQGGTME MTVMNASLLA GNAKEMAIFD FPFMFNNTRE ADAIADGPIG QKLLDKLQER GLVGLAYWDL GFRQMHTLKR PIAKADDFKG LKMRVIPTPI YVDFMKALGA SPVPMPFTET YTALEQGAID GMTNPLLNIL DGKYNEVSKH LTITNHMYTP QAVIVSKKFW DKLSPVEQKI LRDAAMETAV FQRKVARDEA AKVLGELKKL GMTVHELPPE ELAKMRERAK PVIEKYTKEL GPVVQEMYAA VEKVRAAK
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