Gene Lcho_1438 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1438 
Symbol 
ID6159845 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1517253 
End bp1518269 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content64% 
IMG OID641664192 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001790471 
Protein GI171058122 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.597094 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATGG TTCGCCGCTG CATTTCTCTT TCGCTTCTGA CCGCTGCGTT GTTCGCGTCC 
GGCCTGAGCC ACGCCGCCGA CATCGAGACC CGCACCATCA AGTTCCCCTC GGCCAGCAAC
AAGGGCCATC CGCAGGTGAT CGGGGTCGAG AAGTTCGCCG AACTGGTCGC CCAGAAGAGC
GGCGGCAAGC TGAGCGTCAA GCCTTTCCCC GGCGGCACGC TGGGGCCGGA TCTGCAGACG
GTCTCGGCCA TGCAGGGCGG CACGATGGAG ATGACGGTGA TGAACGCCAG CCTGCTGGCC
GGCAACGCCA AGGAGATGGC GATCTTCGAC TTCCCGTTCA TGTTCAACAA CACGCGTGAG
GCCGACGCCA TCGCCGACGG CCCGATCGGC CAGAAGCTGC TCGACAAGCT GCAGGAGCGC
GGTCTGGTCG GCCTGGCGTA CTGGGACCTG GGCTTTCGCC AGATGCACAC GCTCAAGCGT
CCGATCGCCA AGGCCGACGA CTTCAAGGGC CTGAAGATGC GCGTGATCCC GACGCCGATC
TACGTCGACT TCATGAAGGC GCTGGGCGCC TCGCCGGTGC CGATGCCCTT CACCGAGACC
TACACCGCGC TGGAGCAGGG GGCGATCGAC GGCATGACCA ATCCGCTGCT CAACATCCTC
GACGGCAAGT ACAACGAGGT CTCCAAGCAC CTGACGATCA CCAACCACAT GTACACGCCG
CAGGCGGTGA TCGTGAGCAA GAAGTTCTGG GACAAGCTCT CGCCGGTCGA GCAGAAGATC
CTGCGTGACG CCGCGATGGA AACGGCGGTG TTCCAGCGCA AGGTGGCGCG TGACGAAGCG
GCGAAGGTGC TGGGTGAACT CAAGAAGCTC GGCATGACCG TGCACGAACT GCCGCCGGAA
GAACTCGCCA AGATGCGCGA GCGTGCCAAG CCGGTGATCG AGAAGTACAC CAAGGAACTC
GGCCCGGTGG TGCAGGAGAT GTACGCGGCG GTCGAGAAGG TTCGCGCAGC GAAGTGA
 
Protein sequence
MNMVRRCISL SLLTAALFAS GLSHAADIET RTIKFPSASN KGHPQVIGVE KFAELVAQKS 
GGKLSVKPFP GGTLGPDLQT VSAMQGGTME MTVMNASLLA GNAKEMAIFD FPFMFNNTRE
ADAIADGPIG QKLLDKLQER GLVGLAYWDL GFRQMHTLKR PIAKADDFKG LKMRVIPTPI
YVDFMKALGA SPVPMPFTET YTALEQGAID GMTNPLLNIL DGKYNEVSKH LTITNHMYTP
QAVIVSKKFW DKLSPVEQKI LRDAAMETAV FQRKVARDEA AKVLGELKKL GMTVHELPPE
ELAKMRERAK PVIEKYTKEL GPVVQEMYAA VEKVRAAK