Gene Lcho_1338 details

Gene Information

• Locus tag: Lcho_1338
• ID: 6160324
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1423044
• End bp: 1423652
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 641664092
• Product: NapC/NirT cytochrome c domain-containing protein
• Protein accession: YP_001790371
• Protein GI: 171058022
• COG category: [C] Energy production and conversion
• COG ID: [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 41
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCGACA GCCCGGGCGC ATTGCGCCGC CTCTGGAATG CGCTGCGGCG CCCCAGCGCC 
ACCTTCTCGG TGCTCACGCT CCTGTTGACC GGGTTCGCCT CGGGCATCGT CTTCTGGGGC 
GGCTTGAACA CCGGCATGGA GGCCACCAAC ACGATGGCGT TCTGCATCTC GTGCCACGAG 
ATGCAGAGCA CGGTCTACGT CGAGTACAAG GAAACGATCC ACTATTCGAA TCGCAGCGGC 
GTGCGTGCCG TGTGCGCCGA CTGCCACGTG CCCAAGGACT GGGTGCACAA GGTGGCCCGC 
AAGATCCAGG CGTCCGGCGA GGTCTACGGC AAGATCGTCG GCAGCATCGA CACGCCCGAG 
AAGTTCGAGG CCAAGCGTGC CGAAATGGCG TCCCATGTCT GGAAGCGCAT GAAGGAGACC 
GATTCTCTGG AATGCCGCAA TTGCCACACC GCCACGGCCA TGAGCCCGGA CAAGCAGACC 
GACAAGGCCA AGGCCCGTCA CGCCAAGGGC TTTGCCGAAG GCAAGACCTG CATCGACTGC 
CATTACGGCA TTGCGCACAA CGAGCCCGAA GGCCCGGGTC CGCAGGAACT GTTCGGCGCC 
AAGCAGTAG 

 

Protein sequence

MADSPGALRR LWNALRRPSA TFSVLTLLLT GFASGIVFWG GLNTGMEATN TMAFCISCHE 
MQSTVYVEYK ETIHYSNRSG VRAVCADCHV PKDWVHKVAR KIQASGEVYG KIVGSIDTPE 
KFEAKRAEMA SHVWKRMKET DSLECRNCHT ATAMSPDKQT DKAKARHAKG FAEGKTCIDC 
HYGIAHNEPE GPGPQELFGA KQ