Gene Lcho_1335 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1335 
Symbol 
ID6162741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1420533 
End bp1421588 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content70% 
IMG OID641664089 
ProductRieske (2Fe-2S) domain-containing protein 
Protein accessionYP_001790368 
Protein GI171058019 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.819447 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGCCC GCAACGCCTG GTACGTGGCC TGCACGCCCG ACGAGTTCGC CGACAAGCCG 
CTCGGCCGCA CGATCTGCGG CGAGCCGCTG GTGTTCTACC GCGACGGCAG CGGTGCGGTC 
GCCGCGCTGG AGGATTTCTG CCCGCACCGC GGCGCGCCGC TGTCGCTCGG CCGCGTCTGC 
GAAGGCAGGC TGGTGTGCGG CTACCACGGC CTCGAGATGG GCTGCGACGG CAAGACCATC 
GCGATGCCGG GCCAGCGGGT GCGCGGCTTC CCGGCGATCC GCAGCTTTCC GGTGATCGAG 
CGCCACGGCT TCGTGTGGGT CTGGCCGGGT GACGCGGCCC GCGCCGACGC CGCGCTGCTG 
CCCGCCCTGC CCTGGGCCGA CCACCCCGAG TGGGCCTACG GCGGCGGGCT CTACAACATC 
GGCTGCGACT ACCGGCTGAT GATCGACAAC CTGATGGACC TGACGCACGA GACCTACGTG 
CACGCCACCA GCATCGGCCA GAAGGAGATC GACGAGGTGC CGTGCAGCAC CCGCGTCGAC 
GGCGACGAGG TCATCACCAG CCGCTTCATG AACGGCATCG AGGCGCCGCC GTTCTGGAAG 
ATGGCGCTGC GCATGAACGG CCTGCCCGAC GACCAGCCGG TCGACCGCTG GCAGATCTGC 
CACTTCACGC CGCCCAGCCA CGTGCTGATC GAGGTCGGCG TGGCGCTGGC CGGCCACGGC 
GGCCACGCGG CGCCCGCCGA GGTCAAGGCG TCGAGCATCG TGGTCGACTT CATCACGCCC 
GAGACCGACG GCTCGATCTG GTATTTCTGG GGCATGGCGC GCCACTTCAA GCCGCACGAC 
CCGTCGCTGA CGACGCAGAT CCGCGACGGC CAGGGCCGCA TCTTTGCCGA GGACCGGGAG 
ATGCTGGAGC GCCAGCAGGC CAACCTGACG CGCTGGCCCG ATCGCAAGCT GCTGGCCCTC 
AACATCGACT CGGGCGGCGT GCAGGCGCGG CGCGTGATCG ATCGCAAGAT CGCCGAAGAA 
CGTGCGCCAT CGGGCGCGCC AGAGAGCAGC TGGTGA
 
Protein sequence
MFARNAWYVA CTPDEFADKP LGRTICGEPL VFYRDGSGAV AALEDFCPHR GAPLSLGRVC 
EGRLVCGYHG LEMGCDGKTI AMPGQRVRGF PAIRSFPVIE RHGFVWVWPG DAARADAALL 
PALPWADHPE WAYGGGLYNI GCDYRLMIDN LMDLTHETYV HATSIGQKEI DEVPCSTRVD 
GDEVITSRFM NGIEAPPFWK MALRMNGLPD DQPVDRWQIC HFTPPSHVLI EVGVALAGHG 
GHAAPAEVKA SSIVVDFITP ETDGSIWYFW GMARHFKPHD PSLTTQIRDG QGRIFAEDRE 
MLERQQANLT RWPDRKLLAL NIDSGGVQAR RVIDRKIAEE RAPSGAPESS W