| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1311 |
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| Symbol | |
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| ID | 6163682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1398065 |
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| End bp | 1399801 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641664066 |
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| Product | restriction modification system DNA specificity subunit |
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| Protein accession | YP_001790345 |
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| Protein GI | 171057996 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0732] Restriction endonuclease S subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCGG TGCTGGAGGC GCGTGAACCG CGCGCGAGCT ACCTGGCCGC GTTGCAGCCG
CCCCTGGTGC GGCAGTTCGA TCTGCTGGCC ACTGCGCCCG GTGGCGTGGC GCGACTGCGC
GAATTGATCC TGACGCTGGC GGTGCAGGGC AAGCTGGTGC CGCAGGATGC GAGCGACGAG
CCGGCGAGTG TGCTGCTGCA GAAGATTCGG GCGGAGAAGA ATCGGTTGAT TGCGGCGAAG
GAAATCAAGC GAGATAAGCC GCTGGCACCG ATAAGCGATG AAGAAATATC GTTTGATGCC
CCACGTGGGT GGGAATTGGT TCGTTTGGGC GACTTGGTGA ATGCCAGTGA AGCGGGCTGG
AGTCCAAGTT GTGCTGGTTC TCCACGCCGT GCCGGGCATT GGGGTGTATT GAAAGTCAGC
GCAGTTTCTT GGGGGAAATT TGATCCCGAA GCCAACAAAG AATTGCCCGC TGATCTGCAG
CCGAAACCAG AATACGAAGT GCGGTCCGGC GATTTTTTGC TATCTCGGGC CAACACGGAA
GAACTTGTCG CGCGTTCAGT TGTCGTTGGT GCTGTCGATC CGCGTTTGAT GCTCAGCGAC
AAGATCATTC GGCTGGACGT TGCAAATCCA ATTCATCGCG GTTTCCTCAA CTTTTGCAAC
AACGAAAAAA GTGCTCGTAC CCATTACGCA GCTAATGCGT CAGGCACAAG CAGTTCGATG
AAAAACGTTT CGCGCGAGGT TGTTCTGAAT CTTCCAATCG CGTTGCCACC CCTCGCCGAA
CAATCCCGCA TCGTCACCCG CGTCGAAGAA CTGATGCGGC TGTGCGATGC GCTCGAAAGC
CAACGCCAGC TCGAAACCGC GCAGCACGCC CAACTGCTGA ACACCCTGCT GGGCACGCTG
ACCGACAGCG CCTCGCCCGA CGAACTGGCC GCCAACTGGC AGCGCGTGAG CGATCACTTC
GACCTGTTGC TCGACCGCCC CCAAGCCGTG GACGCGCTGG AGCAGACCAT CCTGCAACTC
GCCGTGCGCG GGCTGCTGGT GCCGCAAGAC CCGACCGACG AGCCGGCGAG TGTGTTGCTG
CAGAAGATTC GGGCGGAGAA GGATCGGTTG ATTGCGGCGC GCAAGATCAA GCGGGACAAG
GCGTTGCCTA TTATTTCTGA CAAAGATGGA CTCGATGATC TGCCAGAAGG ATGGGTCGTG
GTTCGGCTGG GTGCAATTAT GGAGCTTGTA TCTGGTCAGC ATCTTGGTCC CGCTGAGTAT
GCAGAGGGTC TTGACTCTGG GATTCCATAT TTAACCGGCC CAGCTGAATT TGGTCCCCAA
TCGCCCAGCC CAACCAGATC AACTGTAGAG CGGCGCGCCA TTGCGATTTG GGGGGATATT
CTCATCACAG TTAAGGGTTC CGGCGTTGGA AAACTCAATG TGGTTGCGCA TTCGGAGATT
GCGATAAGCC GCCAATTGAT GGCGGTTCGC TCGATTGGCG TGAATGATGC GTTCCTCTTT
ATTGTGCTCA AAACGCTTGA GATTAAGTTC CAGATGCAGT CAGTCGGCAT AGCTATTCCT
GGCATTGGTA GAGAGGATGT TTCTCACTCA ATTCTTGGCC TACCACCCCT CGCTGAACAA
GCCCGCATCG TCGCCCGCGT CACCCAACTC CGCAGCCACT GCGCCGACCT GCGCCAACGC
CTGTCAGCCC GTCAGGCCAT CCAAAGCCAT CTGGCCGAGG CGCTGGTGGA GGTTTGA
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| Protein sequence | MSAVLEAREP RASYLAALQP PLVRQFDLLA TAPGGVARLR ELILTLAVQG KLVPQDASDE
PASVLLQKIR AEKNRLIAAK EIKRDKPLAP ISDEEISFDA PRGWELVRLG DLVNASEAGW
SPSCAGSPRR AGHWGVLKVS AVSWGKFDPE ANKELPADLQ PKPEYEVRSG DFLLSRANTE
ELVARSVVVG AVDPRLMLSD KIIRLDVANP IHRGFLNFCN NEKSARTHYA ANASGTSSSM
KNVSREVVLN LPIALPPLAE QSRIVTRVEE LMRLCDALES QRQLETAQHA QLLNTLLGTL
TDSASPDELA ANWQRVSDHF DLLLDRPQAV DALEQTILQL AVRGLLVPQD PTDEPASVLL
QKIRAEKDRL IAARKIKRDK ALPIISDKDG LDDLPEGWVV VRLGAIMELV SGQHLGPAEY
AEGLDSGIPY LTGPAEFGPQ SPSPTRSTVE RRAIAIWGDI LITVKGSGVG KLNVVAHSEI
AISRQLMAVR SIGVNDAFLF IVLKTLEIKF QMQSVGIAIP GIGREDVSHS ILGLPPLAEQ
ARIVARVTQL RSHCADLRQR LSARQAIQSH LAEALVEV
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