Gene Lcho_1301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1301 
Symbol 
ID6163953 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1387683 
End bp1388573 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content65% 
IMG OID641664055 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_001790335 
Protein GI171057986 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01122] branched-chain amino acid aminotransferase, group I 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0767028 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGGCG AGCTGGTGGA GTGGCGCGAC GCCAAGATCC ACGTGCTCAG CCACACGCTG 
CACTACGGCT GCGGCGCCTT CGAGGGCGTG CGCGCCTACA AGACGGCGCA AGGCCCGGCG 
ATCTTCCGCC TGCGCGAGCA CACCGAGCGG CTCTTCAACA GCGCCAAGAT CCTGCGCATG 
AAGATCCCGT TCACGCTGGA ACAGGTGATG GACGCGCAGA AGACCGTCGT GCGCGAGAAC 
CAGCTCGAAA GCGGCTACAT CCGCCCGCTG ACCTGGATCG GCTCGCAGAA GCTCGGCGTC 
AGCCCGAAGG GCAACACCAT CCACCTGATG GTCGCGGCCT GGACCTGGGG CGCCTACCTC 
GGCGAAGAAG GCCTCAAGCG CGGCATCCGC GTCAAGACCA GCAGCTACAC CCGCCACCAC 
GTCAACATCA CGATGACGCA GGCCAAGGCG GTGAGCAACT ACACCAACTC GATCCTGGCC 
AACATGGAAG TGACCGAAGA GGGCTACGAC GAGGCGCTGC TGCTCGACGC ATCCGGCTTC 
GTCAGCGAAG GCGCGGGCGA GAACATCTTC ATCATCAAGA ACGGCGTGGT CTACACGCCC 
GACCTGTCGG CCGGCGCGCT CAACGGCATC ACCCGCAACA CGATCTTCCA CATTGCCAAG 
GATCTGGGCC TGGAGGTCGT GCAGAAGCGC ATCACCCGCG ACGAGGTCTA CATCGCCGAC 
GAGGCCTTCT TCACCGGCAC CGCCGCCGAA GTGACGCCGA TCCGCGAACT CGATCGCATC 
GAGATCGGCG CCGGCTCGCG CGGCCCGATC ACCGAGAAGA TCCAGGCGGC GTTCTTCGAC 
ATCGTCAACG GCCGCAACCC CCAGTACGCC GAATGGCTGG ATCACGTTTG A
 
Protein sequence
MDGELVEWRD AKIHVLSHTL HYGCGAFEGV RAYKTAQGPA IFRLREHTER LFNSAKILRM 
KIPFTLEQVM DAQKTVVREN QLESGYIRPL TWIGSQKLGV SPKGNTIHLM VAAWTWGAYL 
GEEGLKRGIR VKTSSYTRHH VNITMTQAKA VSNYTNSILA NMEVTEEGYD EALLLDASGF 
VSEGAGENIF IIKNGVVYTP DLSAGALNGI TRNTIFHIAK DLGLEVVQKR ITRDEVYIAD 
EAFFTGTAAE VTPIRELDRI EIGAGSRGPI TEKIQAAFFD IVNGRNPQYA EWLDHV