Gene Lcho_1285 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1285 
Symbol 
ID6162176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1370240 
End bp1371226 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content74% 
IMG OID641664039 
ProducttRNA delta(2)-isopentenylpyrophosphate transferase 
Protein accessionYP_001790319 
Protein GI171057970 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase 
TIGRFAM ID[TIGR00174] tRNA isopentenyltransferase (miaA) 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00000169649 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCTGAGC GCAACCCCGT GGCGCCGCCC GCCCTGCCCT GGCTGGCGAT CGCCGGCCCC 
ACCGCCAGCG GCAAGACCGG CGCGGCGCTC GCGATCGCCC GCCATTGGCG CCAACGCGGC
GGGCCGCCGG TCGAGATCAT CAGCGTCGAC TCGGCGCTGG TCTACCGCGG CATGGACATC
GGCACCGCCA AGCCCAGCGC CGCCGAGCGG GCTGAGGTGC CGCACCACCT GATCGACCTG
ATCGAACCGA CCGCCGCCTA TTCGGCCGCC GAGTTCGCCG CCGACGCCGC ACGCCTGATC
GGCGAGATCC ACGGCCGCGG CGCGCTGCCG CTGCTGGTGG GCGGCACGAT GCTGTATTTC
AAGGTCTGGC TCGACGGCAT CGACCCGCTG CCGACTGCCG ACGCCGGCGT GCGCGCGCAG
ATCGACCAGC GCGCACGCGA GCTCGGCTGG CCGGCGCTGC ACGCCGAGCT GGCGCGGGTC
GACCCGATCA CCGCCGCCCG CCTGGCGCCG GCCGACGCGC AGCGCATCCA GCGCGCGCTC
GAGGTCTGGC AGATCAGCGG ACAGCCGCTG TCGAGCCTGC ACACCGGCCG CAGCGCGTCG
TCGGCCTGGG CACACAGCGG GCTGATGCTG TCGCTGGAGC CGACCTCGCG CGCATGGCTG
CACCAGCGCA TCGGCGAGCG CTTCGAGGCC ATGCTCGCGG CCGGCCTGAT CGACGAGGTC
GAACACCTGC GCGCACGTGG CGACCTGCAC CCGGATCTGC CGTCGATGCG CTGCGTCGGC
TACCGCCAGA CCTGGGAGAT GCTCGACGGC CTGTGGCCCT CGGCCGAACT GCTCGAACGC
TGCAGCGCCG CCACCCGCCA GCTCGCCAAG CGCCAGCTCA CCTGGCTGCG CGGCATGCCG
CGCCGCCAGG TGCTGGCCTG CGACGAGCCC GGCCTGGTCG AGCGCGTGCT GAGCCGCGCC
GACGCCTGGC AAGCGGACGC GCGATGA
 
Protein sequence
MPERNPVAPP ALPWLAIAGP TASGKTGAAL AIARHWRQRG GPPVEIISVD SALVYRGMDI 
GTAKPSAAER AEVPHHLIDL IEPTAAYSAA EFAADAARLI GEIHGRGALP LLVGGTMLYF
KVWLDGIDPL PTADAGVRAQ IDQRARELGW PALHAELARV DPITAARLAP ADAQRIQRAL
EVWQISGQPL SSLHTGRSAS SAWAHSGLML SLEPTSRAWL HQRIGERFEA MLAAGLIDEV
EHLRARGDLH PDLPSMRCVG YRQTWEMLDG LWPSAELLER CSAATRQLAK RQLTWLRGMP
RRQVLACDEP GLVERVLSRA DAWQADAR