Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1285 |
Symbol | |
ID | 6162176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1370240 |
End bp | 1371226 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641664039 |
Product | tRNA delta(2)-isopentenylpyrophosphate transferase |
Protein accession | YP_001790319 |
Protein GI | 171057970 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase |
TIGRFAM ID | [TIGR00174] tRNA isopentenyltransferase (miaA) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00000169649 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCCTGAGC GCAACCCCGT GGCGCCGCCC GCCCTGCCCT GGCTGGCGAT CGCCGGCCCC ACCGCCAGCG GCAAGACCGG CGCGGCGCTC GCGATCGCCC GCCATTGGCG CCAACGCGGC GGGCCGCCGG TCGAGATCAT CAGCGTCGAC TCGGCGCTGG TCTACCGCGG CATGGACATC GGCACCGCCA AGCCCAGCGC CGCCGAGCGG GCTGAGGTGC CGCACCACCT GATCGACCTG ATCGAACCGA CCGCCGCCTA TTCGGCCGCC GAGTTCGCCG CCGACGCCGC ACGCCTGATC GGCGAGATCC ACGGCCGCGG CGCGCTGCCG CTGCTGGTGG GCGGCACGAT GCTGTATTTC AAGGTCTGGC TCGACGGCAT CGACCCGCTG CCGACTGCCG ACGCCGGCGT GCGCGCGCAG ATCGACCAGC GCGCACGCGA GCTCGGCTGG CCGGCGCTGC ACGCCGAGCT GGCGCGGGTC GACCCGATCA CCGCCGCCCG CCTGGCGCCG GCCGACGCGC AGCGCATCCA GCGCGCGCTC GAGGTCTGGC AGATCAGCGG ACAGCCGCTG TCGAGCCTGC ACACCGGCCG CAGCGCGTCG TCGGCCTGGG CACACAGCGG GCTGATGCTG TCGCTGGAGC CGACCTCGCG CGCATGGCTG CACCAGCGCA TCGGCGAGCG CTTCGAGGCC ATGCTCGCGG CCGGCCTGAT CGACGAGGTC GAACACCTGC GCGCACGTGG CGACCTGCAC CCGGATCTGC CGTCGATGCG CTGCGTCGGC TACCGCCAGA CCTGGGAGAT GCTCGACGGC CTGTGGCCCT CGGCCGAACT GCTCGAACGC TGCAGCGCCG CCACCCGCCA GCTCGCCAAG CGCCAGCTCA CCTGGCTGCG CGGCATGCCG CGCCGCCAGG TGCTGGCCTG CGACGAGCCC GGCCTGGTCG AGCGCGTGCT GAGCCGCGCC GACGCCTGGC AAGCGGACGC GCGATGA
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Protein sequence | MPERNPVAPP ALPWLAIAGP TASGKTGAAL AIARHWRQRG GPPVEIISVD SALVYRGMDI GTAKPSAAER AEVPHHLIDL IEPTAAYSAA EFAADAARLI GEIHGRGALP LLVGGTMLYF KVWLDGIDPL PTADAGVRAQ IDQRARELGW PALHAELARV DPITAARLAP ADAQRIQRAL EVWQISGQPL SSLHTGRSAS SAWAHSGLML SLEPTSRAWL HQRIGERFEA MLAAGLIDEV EHLRARGDLH PDLPSMRCVG YRQTWEMLDG LWPSAELLER CSAATRQLAK RQLTWLRGMP RRQVLACDEP GLVERVLSRA DAWQADAR
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