| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1272 |
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| Symbol | |
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| ID | 6162631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1356601 |
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| End bp | 1358247 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664026 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001790306 |
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| Protein GI | 171057957 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4172] ABC-type uncharacterized transport system, duplicated ATPase component |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000618356 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCCCG TCATCGGAAT GCCGCTGCTG CAGGTCGAGC ACCTCCACGT CGCGTTCGGC
GACAGCCGGG TGGTCGACGA CGTCTCGTTC GAGATCGGCG TGGGTGAGAA GTTCGCGCTG
GTCGGCGAGT CGGGTTCGGG CAAGTCGATC AGCGCGATGT CGATCCTGCG GCTGGTCGAA
GGTGCGGCCA GCAGCGGCGC GATCCGCTTC GACGGCGCCG ACCTGATGGC GCACAGCGAG
CGCCAGATGC GCGGCATCCG CGGCAAGGAC ATCGCGATGA TCTTCCAGGA GCCGATGACG
GCCCTGAACC CGCTCTACAC GGTGGGCAAC CAGATCGGCG AGGTGCTCGA ACTGCACGAG
GGCCTGAGCG CACGCGAGGC CCGCGCGCGC GCCATCGAGC TGCTGGCGCG CACCGGCATC
CCCGAGCCCG AACGCCGCAT CGACAGCTAC CCGCACCAGC TCTCGGGCGG CCAACGCCAG
CGCGTGATGA TCGCGATGGC GCTGGCCTGC AAGCCGCGCC TGCTGATCGC CGACGAGCCG
ACCACCGCGC TCGACGTCAC CATCCAGGCG CAGATCCTGG CCCTGCTCGA CGAGCTGCAG
CGCGAGATGG GCATGGCGCT GCTGTTCATC ACGCACGACC TCAATCTGGT CGGCCGCTAC
AGCGACCGGG TGGCGGTGAT GGAGCGCGGG CGCATCGTCG AGGCCGGCGC CACCGCGCGG
GTGTTCGCGC GGCCACGCCA CCCGTACACG CAGAAGCTGC TGGCGAGCCG GCCGGTGCCG
CTGCCGCCGG ACCGCGAGCT GCGCAGCACG CCGCTGCTGC AGGCGCAGTC GCTCAAGGTC
GAGTTCGTGC AGAACGAGGG CTGGTTCAGG AAGCGCCATT TCGTCGCGGT GAAGGACGCC
TCGCTGCTGC TGCCACGCGG CCAGACGCTC GGCGTGGTCG GCGAATCGGG CTCGGGCAAG
ACCACGCTCG GCATGGCGCT GCTGTCGCTG CAGGCGCTCG CCGGGGGCGA GGTGACGCTG
CACAACCTGG TGGGCAGCAA CACCAATCAG CGTGCCAACC AGCGTGTCGA CCTGGCCGAA
GGTGCCGACC TGCGCGCGCT GCGGCGGCGC ATGCAGGTGG TGTTCCAGGA TCCGTTCGCG
GCGCTGTCGC CGCGTCTGAC GATCGGCCAG ATCGTCGGCG AGGGCCTGGC GCTGCACATG
CCCGAACTGA GCGCCGTGCA GCGCGAGGCG CGCATCCGCG CCATGCTGGG CGAGGTCGGA
CTGGAGTCGG CCGATGCCCA CAACCGCGGT GCCGGCGACA TGCTGCAGCG CTACCCGCAC
GAGTTCTCGG GTGGCCAGCG CCAGCGCATC GCGATCGCGC GGGCGGTGAT CCTGCGCCCC
GAACTGCTGG TGCTCGACGA GCCGACCTCG GCGCTCGACG CCTCGGTGCA GCAGCAGGTG
CTGGCGCTGC TGCTGCGGCT GCAGCGCGAG CTCGGCATGA GCTACCTGTT CATCAGCCAC
GACCTGGCGG TGATCCGCGC GATGGCGCAT CAGGTGCTGG TGATGAAGGA CGGCGAGATC
GTCGAGCGCG GCGCCACCGC GCAGGTGTTC GCAGCGCCCA GGCATCCGTA CACGCGCAGC
CTGCTCGAAG CGGCGCTGAT GCACTGA
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| Protein sequence | MTPVIGMPLL QVEHLHVAFG DSRVVDDVSF EIGVGEKFAL VGESGSGKSI SAMSILRLVE
GAASSGAIRF DGADLMAHSE RQMRGIRGKD IAMIFQEPMT ALNPLYTVGN QIGEVLELHE
GLSAREARAR AIELLARTGI PEPERRIDSY PHQLSGGQRQ RVMIAMALAC KPRLLIADEP
TTALDVTIQA QILALLDELQ REMGMALLFI THDLNLVGRY SDRVAVMERG RIVEAGATAR
VFARPRHPYT QKLLASRPVP LPPDRELRST PLLQAQSLKV EFVQNEGWFR KRHFVAVKDA
SLLLPRGQTL GVVGESGSGK TTLGMALLSL QALAGGEVTL HNLVGSNTNQ RANQRVDLAE
GADLRALRRR MQVVFQDPFA ALSPRLTIGQ IVGEGLALHM PELSAVQREA RIRAMLGEVG
LESADAHNRG AGDMLQRYPH EFSGGQRQRI AIARAVILRP ELLVLDEPTS ALDASVQQQV
LALLLRLQRE LGMSYLFISH DLAVIRAMAH QVLVMKDGEI VERGATAQVF AAPRHPYTRS
LLEAALMH
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