| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1270 |
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| Symbol | |
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| ID | 6162629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1355277 |
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| End bp | 1355843 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664024 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_001790304 |
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| Protein GI | 171057955 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0000738392 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATGCCG ATCGCACCGA ATTCGACTAT GAAGCCGCCC TCGCGGCTTG CGCCGCGGGC
GATCGCAAGG CGTTGAGCGC CCTCTACGAC CAGGAAGGGG CGCGCATGCT GGGGGTCGCG
CTGCGCGTGG TGCGACGGCG CGAACTGGCC GAGGACATCG TGCACGACGC CTGCGTCGCC
ATCTGGCAGC GGGCCGCGAG CTTCGACCCG GCACGCGGCA GTGGCCGGGG CTGGATCTAC
ACCGTGGTCA GGAACCTGGC GCTCGACGCC GTGCGCGCCA GCTCGCGCGA TGTCGACCTC
GACGACACGG CGGTCGAGTC GCGTGAAGCC GAACTGGCGC TCGACGCCCA CCGCGACATC
GCCGAAGCCT TCGAGCTCAA CGCCAGCCTG GGCCGCCTGC GCACCTGCCT GGCCGCGCTC
GATGCGCCGC GCCGCAACTG CGTGCTGCAC GCCTACGTCG ACGGCTGCTC GCACGGCGAG
ATCGCCGAGC GCCTGGGCGC GCCGCTGGGC ACCGTCAAGG CCTGGATCCG GCGCAGCCTG
CTGGCGCTGC GGGAGTGCAT GGCATGA
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| Protein sequence | MHADRTEFDY EAALAACAAG DRKALSALYD QEGARMLGVA LRVVRRRELA EDIVHDACVA
IWQRAASFDP ARGSGRGWIY TVVRNLALDA VRASSRDVDL DDTAVESREA ELALDAHRDI
AEAFELNASL GRLRTCLAAL DAPRRNCVLH AYVDGCSHGE IAERLGAPLG TVKAWIRRSL
LALRECMA
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