| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1262 |
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| Symbol | |
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| ID | 6162879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1347700 |
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| End bp | 1349505 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664016 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001790296 |
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| Protein GI | 171057947 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000140001 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCAAGT CCAAGCTCTC CGATCGCGCC AGTGCCCAGA GTCCCCGTTC GCTGTCAGGG
CTGGGGCCGT TCCTGAAACC GTACCGGCTG CAGATCGGCC TGGCCGGGCT GTTCCTGGTG
ATGGCCGCGG CCACCACGCT GGTGTTTCCG GTGGCGCTGC GCACGCTGAT CGACGAGGGC
CTGGTGGCAG CCGATCCGGG CGAGCGGCTG ATGGCGCTGC GCGGCCATTT CCTGGCGCTG
TTCGCGGTCG GCGCGGCGCT CGGGCTGTTC TCGGCGGCGC GTTTCTACAT GGTCAGCTGG
CTGGGCGAAC GGGTCACCGC CGACCTGCGC AACGCGGTCT ACTCGCACGT GGTGCGGCAG
AGCCCGGCCT TCTTCGAGAC CACCCAGACC GGCGAGGTGC TGTCGCGCCT GACCACCGAC
ACCACGCTGG TGCAGACGGT GGTGGGCTCG AGCCTGAGCA TGGGCCTGCG CAACAGCGTG
ATGGGCATCG GCGCGCTGGG CATGCTGGTC GCCACCAACC CCTACGTGAT GACGCAGGTG
CTGGGCATGC TGGTGCTGGT GGTGCTGCCG TCGCTGTATT TCGGCCGACG CGTGCGCAAG
CTCAGCCGCG CCAGCCAGGA CCGCGTGGCC GACTCCAGCG CGATCGCCGC CGAGGTGCTC
AACGCCATCC CCGTGGTGCA GAGCTACACG CAGGAAGACC GCGAGGCACG GCGTTTCAAC
GTCACCACCG AACACGCCTT CGAGACCGCC CGCAAGCGCA GCCGGGTGCG CGCGATGCTG
GTGGCCTTCA TCATCAGCGC CACCTTCGGC GCGCTGCTGT GGGGGCTGTA CCAGGGCACG
CAGGCGGTGA TCCGCGGCGA CATCAGCGCC GGGCACCTGG GCCAGACGGT GGTCTACGTG
GTGATCCTGG TCAGCAGCGT GGCGGTGCTG TCCGAGGTCT ACGGCGACCT GCTGCGTGCC
GCCGGCGCCA CCGAGCGACT GATGGAACTG CTCGGCGCAC GCTCGCCGGT GGCCGAGCCG
GCGCAGCCGC TGGCGCTGCC GGCCACGCGG GGCGGCTCGG CGGTGGCGCT CGACCAGGTG
ACGTTCCACT ACCCGTCGCG GCCCGCGCAC GCGGCGCTGC GCGACTTCAG CCTGAGCGTC
ATGCCGGGCG AAACCGTCGC GCTGGTGGGC GCCAGCGGCG CCGGCAAGAG CACCGTGTTC
CAGCTGCTGC TGCGTTATTA CGACGCCCAG CACGGCGCCG TCCGCATCGA CGGCGTGCGG
GTCGACGCGG TGGCGCTGCA CGACCTGCGC GCGCGCATCG GCATCGTGCC GCAGGACAGC
ACGATCTTCT CGGCCAACGC GCTCGAGAAC ATCCGCTACG GCCGCCCCGA CGCGAGCGAT
GCCGAGGTGA TGGCCGCCGC CAAGGCGGCT TACGCGCACG AGTTCATCAG CGCGCTGCCC
GAGGGCTACC AGACCTTCCT GGGCGAACGC GGCGTGCGGC TGTCGGGCGG CCAGCGCCAG
CGCATCAGCA TCGCCCGCGC GATCCTGAAG AACCCGCCGC TGCTGCTGCT CGACGAGGCC
ACCAGCGCGC TCGACGCCGA GAGCGAGCGC GTGGTGCAGG CCGCCCTCGA GGCCGCGATG
GCGCACCGCA CCACCCTCGT GATCGCGCAC CGCCTGGCCA CGGTGCAGCG CGCCGACCGC
ATCATCGTGC TCGAAGATGG TTGTATCGTC GAAACCGGCA CCCACACGCA GCTCGTGGAC
CAGGGCGGGA TCTACGCCCG GCTGGCCGCG ATGCAGTTCA ACGGACAACC CAGCGAGTCA
TCATGA
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| Protein sequence | MSKSKLSDRA SAQSPRSLSG LGPFLKPYRL QIGLAGLFLV MAAATTLVFP VALRTLIDEG
LVAADPGERL MALRGHFLAL FAVGAALGLF SAARFYMVSW LGERVTADLR NAVYSHVVRQ
SPAFFETTQT GEVLSRLTTD TTLVQTVVGS SLSMGLRNSV MGIGALGMLV ATNPYVMTQV
LGMLVLVVLP SLYFGRRVRK LSRASQDRVA DSSAIAAEVL NAIPVVQSYT QEDREARRFN
VTTEHAFETA RKRSRVRAML VAFIISATFG ALLWGLYQGT QAVIRGDISA GHLGQTVVYV
VILVSSVAVL SEVYGDLLRA AGATERLMEL LGARSPVAEP AQPLALPATR GGSAVALDQV
TFHYPSRPAH AALRDFSLSV MPGETVALVG ASGAGKSTVF QLLLRYYDAQ HGAVRIDGVR
VDAVALHDLR ARIGIVPQDS TIFSANALEN IRYGRPDASD AEVMAAAKAA YAHEFISALP
EGYQTFLGER GVRLSGGQRQ RISIARAILK NPPLLLLDEA TSALDAESER VVQAALEAAM
AHRTTLVIAH RLATVQRADR IIVLEDGCIV ETGTHTQLVD QGGIYARLAA MQFNGQPSES
S
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