Gene Lcho_1242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1242 
Symbol 
ID6160746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1330446 
End bp1330952 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content61% 
IMG OID641663996 
Producthypothetical protein 
Protein accessionYP_001790276 
Protein GI171057927 
COG category[S] Function unknown 
COG ID[COG1666] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.1131 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAGA ACGACACCAT GCCCAGCTTC GACACCGTGC TTGAACCCAA TCTGGTCGAG 
GTGAAAAACG CCATCGACCA ATCCAACAAG GAAATCGCCA CCCGCTTCGA CTTCAAGGGC 
AGCGACGCCC GCATCGAGCA GAAGGACAAG GAGCTGACGC TGTTCGCCGA CAACGACCTG 
CAGCTGGGCA ACGTCACCGA CATCCTGATC GGCAAGATGG CCAAGCGCGG CGTCGACATC 
CGCTTCCTCG ACCGCGAGGC CAAGCCCGAG AAGATGAGCC ACGACAAGCT CAAGCAGAAG 
GTGCTGGTCA AGGCCGGCAT CGAGGCCGAC GTGGCCAAGA AGATCAGCAA GGCGATCAAG 
GACAGCAAGA TGAAGGTGCA GGCCAGCATC CAGGGCGACA CCGTGCGCGT GACCGGCGCC 
AAGCGCGACG ACCTGCAGGC CGCGATGGCG CTGATCAAGA AGGAAATCAG CGACTACCCG 
CTGAGCTTCA ACAACTTCCG CGACTGA
 
Protein sequence
MIENDTMPSF DTVLEPNLVE VKNAIDQSNK EIATRFDFKG SDARIEQKDK ELTLFADNDL 
QLGNVTDILI GKMAKRGVDI RFLDREAKPE KMSHDKLKQK VLVKAGIEAD VAKKISKAIK 
DSKMKVQASI QGDTVRVTGA KRDDLQAAMA LIKKEISDYP LSFNNFRD