| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1236 |
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| Symbol | |
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| ID | 6163960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1322380 |
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| End bp | 1325376 |
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| Gene Length | 2997 bp |
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| Protein Length | 998 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641663990 |
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| Product | isoleucyl-tRNA synthetase |
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| Protein accession | YP_001790270 |
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| Protein GI | 171057921 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0060] Isoleucyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00392] isoleucyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.994716 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCATC CGAACGACGC CCAGACCGCC GGCAAGCCTG CCCGCAAGAA CCAGGACAAG
CCGGCCGGCA AATCCGCTGC CGAGGGTGCT GACAGCGGCG GCGGCGCCTA CCGCGCCACG
CTGAACATGC CCGACACGGC GTTCCCGATG CGCGGCGACC TGCCCAAGCG CGAGCCGGGC
TGGGTCGAAC AATGGAATGC ACCGGGTGAT GATGGAACAA GCGGGGGCCT GTACCAGCGC
CTGCGCGTGG CGCGTCGCGA CGCGCCGCTG TTCGTGCTGC ACGACGGCCC GCCGTATGCC
AACGGCCGCC TGCACATCGG CCATGCGCTC AACAAGGTGC TCAAGGACAT GATCGTCAAG
TCCAAGCAGC TGGCCGGCTT CGACGCGCAG TACATCCCCG GCTGGGATTG CCACGGCCTG
CCGATCGAGA ACGCGATCGA GAAGCTGCAC GGCCGCAAGT TGAGCCGCGA CGACATGCAG
GCCAAGAGCC GCGCCTACGC CACCGAACAG ATCAACCAGC AGCGCGAGGA CTTCAAGCGC
CTGGGCGTGC TGGGCGACTG GGAGCGCCCG TATCGCACGA TGGACTTCGC CAACGAGGCC
GGCGAGATCC GCGCCTTCAA GCGCGTGATC GAACGTGGCT TCGTCTACCG CGGCTTGAAG
CCGGTGTACT GGTGCTTCGA CTGCGGCTCG TCGCTGGCCG AGTTCGAGAT CGAATACGCC
GACAAGAAGA GCGACACGCT CGACGTCGCC TTCGAGGCCG ATGACGCCGC CGCGCTGGCT
GCTGCCTTCG GTCTGTCGCA GCTGCCGGGC GATGGCGCCA AGAAAGCCTT CGCGGTGATC
TGGACCACCA CCGCCTGGAC CATCCCCGCC AACCAGGCGC TGAACGCCCA CCCCGAGCTG
ACCTACGCGC TGGTCGACAC GCCGCGCGGC GTGCTGCTGC TGGCCGAGGA GCTGGTCGCC
AAGTGCCTGG AGCGCTACAA GCTCGACGGC AGCGTGATCG CCACCGCCCC GGGCGCGGCG
CTCAAGGGGC TGGTGTTCCG CCACCCGTTG CACGACACGG TGACGGCCGA AGAAGGCGGT
GCGTACAGCT ACCGCCGCAA GAGCCCGCTG TACCTGGCCG ACTACGTCAC CGCCGGCGAC
GGCACCGGCA TCGTGCACTC GGCACCGGCC TACGGCGTGG ACGACTTCAA CAGCTGCGTC
GCGCACGGCC TGAAGGTCGA CGACATCCTC AATCCGGTGC ACGGCAACGG CGTCTACGCC
GACGAGCTGC CGTTCTTCGG CGGCCAGCAC ATCTGGAAGG CCTGCGAGCG GGTCATCGAG
GTGCTGGGCC AGAGCGACCG CCTGATGGCC ACGCAAGGCA TCGTCCACAG CTACCCGCAC
TGCTGGCGCC ACAAGACGCC GGTGATCTAC CGCGCCGCCG CGCAGTGGTT CGTGCGCATG
GACGAGGGCG ACGGTGTCTT CACGACCGAC AAGGCACCGA AGACGCTGCG CCAGCTCGCG
CTCGACGCCA TCGACCAGAC CAGCTTCTAC CCCGAAAACG GCCGCACCCG CCTGCGCGAC
ATGATCGCCA ACCGGCCCGA CTGGTGCATC AGCCGCCAGC GTTCGTGGGG CGTGCCGGTG
CCGTTTTTCC TGCACAAGGA TTCGGGCGAG CTGCACCCGC GCACGATGGC CATCCTCGAC
CAGGCCGCGG CCATCGTCGA ATCCGGTGGC ATCGAGGCCT GGAGCCGCGT GACACCCGAG
CAGATCCTGG GCGCAGAAGA CGCGGTGCAC TACACCAAGA GCACCGACAT CCTCGAGGTC
TGGTTCGACT CGGGCTCGAC CTTCCGCCAC GTGCTGCGTG GCAGCCACGC CCACGCCTAC
GACCGCGCGC CGTTCCACGA TCAAGGCCCC GAGGCCGACC TCTACCTCGA AGGCCACGAC
CAGCACCGCG GCTGGTTCCA CAGCTCGCTG CTGCTGGCCT GCGCGCTCGA AGACCGCGCG
CCCTACCGCG GCCTGCTGAC CCACGGTTTT GCCACCGACG GCCAGGGCCG CAAGATGAGC
AAGAGCCTGG GCAACACGGT CGAACCGCAG ACCATCACGA GCAAGCTCGG CGCCGAGATC
GTGCGCCTGT GGGTGGCCAG CACCGACTAC TCGGGCGACC TCAACATCGA CGACAAGATC
CTGGCCCGCG TGGTCGATGC GTATCGACGC ATCCGCAACA CGTTGCGTTT CCTGATGGCC
AACAGCTCGG ACTTCGATCC GGCGGTTGAC ACGGTGCCGG CCGACCAGCT GCTGGAGATC
GACCGCTACG CGCTGGCGCG CACGGCCGAA CTGCAGGCCG AGATCCTGGC GCACTTCGAG
GTCTACGAGT TCCACCCGGT GGTGTCGAAG CTGCAGGTGT TCTGCTCCGA GGACCTGGGC
GCGTTCTACC TCGACGTGCT CAAGGACCGC CTCTACACCA GCGCGCCCAA GAGCCTGGCA
CGTCGCTCGG CGCAGACCGC GCTGCACCAG ATCACGCACG CGATGCTGCG CTGGATGGCG
CCGTTCCTGA GCTTCACGGC CGAAGAGGCG TGGGCGATCT TTGCCGCCGG CCAGAGCAGC
GGCTCGATCT TCACCGAGAC CTTCTCGACC TTCGACGCTC CCGATGCCGC GCTGCTGGCC
AAGTGGGCGC GCATCCGCGC GATCCGCGAC GCTGCCAACA AGGAGATCGA GACCGTGCGC
ACCGCCGGCC AGGTCGGCTC GTCGCTGCAG GCCACGCTGG CGATCACGGC CAACGCGGAA
GACGCGGCCC TGCTGCGCTC GCTGGGCGAC GACCTGAAGT TCGTCACCAT CACCTCGGCC
GTGACGGTCG AGGACGGCGC CGAGCTGGCG ATCACGGTCG CGCCGAGCAC GGCGGTCAAG
TGCGAGCGTT GCTGGCATTA CCGCGACGAC GTCGGCAGCG ATGCGGCGCA TCCGACGATC
TGCGCTCGCT GCGTCAGCAA CCTGCACGGC GACGGCGAAC TGCGCACGGT GGCCTGA
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| Protein sequence | MNHPNDAQTA GKPARKNQDK PAGKSAAEGA DSGGGAYRAT LNMPDTAFPM RGDLPKREPG
WVEQWNAPGD DGTSGGLYQR LRVARRDAPL FVLHDGPPYA NGRLHIGHAL NKVLKDMIVK
SKQLAGFDAQ YIPGWDCHGL PIENAIEKLH GRKLSRDDMQ AKSRAYATEQ INQQREDFKR
LGVLGDWERP YRTMDFANEA GEIRAFKRVI ERGFVYRGLK PVYWCFDCGS SLAEFEIEYA
DKKSDTLDVA FEADDAAALA AAFGLSQLPG DGAKKAFAVI WTTTAWTIPA NQALNAHPEL
TYALVDTPRG VLLLAEELVA KCLERYKLDG SVIATAPGAA LKGLVFRHPL HDTVTAEEGG
AYSYRRKSPL YLADYVTAGD GTGIVHSAPA YGVDDFNSCV AHGLKVDDIL NPVHGNGVYA
DELPFFGGQH IWKACERVIE VLGQSDRLMA TQGIVHSYPH CWRHKTPVIY RAAAQWFVRM
DEGDGVFTTD KAPKTLRQLA LDAIDQTSFY PENGRTRLRD MIANRPDWCI SRQRSWGVPV
PFFLHKDSGE LHPRTMAILD QAAAIVESGG IEAWSRVTPE QILGAEDAVH YTKSTDILEV
WFDSGSTFRH VLRGSHAHAY DRAPFHDQGP EADLYLEGHD QHRGWFHSSL LLACALEDRA
PYRGLLTHGF ATDGQGRKMS KSLGNTVEPQ TITSKLGAEI VRLWVASTDY SGDLNIDDKI
LARVVDAYRR IRNTLRFLMA NSSDFDPAVD TVPADQLLEI DRYALARTAE LQAEILAHFE
VYEFHPVVSK LQVFCSEDLG AFYLDVLKDR LYTSAPKSLA RRSAQTALHQ ITHAMLRWMA
PFLSFTAEEA WAIFAAGQSS GSIFTETFST FDAPDAALLA KWARIRAIRD AANKEIETVR
TAGQVGSSLQ ATLAITANAE DAALLRSLGD DLKFVTITSA VTVEDGAELA ITVAPSTAVK
CERCWHYRDD VGSDAAHPTI CARCVSNLHG DGELRTVA
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