| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1231 |
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| Symbol | |
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| ID | 6163931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1317593 |
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| End bp | 1319593 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663985 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001790265 |
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| Protein GI | 171057916 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCC ACGCCGACTG CCACCTCTCA CCGACGCCGC CACCGAACCT GGCTCCACCG
ATGCCCGTCC CATCGCCCAA GCTGCTGCCG TCGTCGACGC TCGACACCCG GACCAGCCTC
GCCTCGCGCC TGACCCGCCT GGCGCTGATC GCCGCCGGGC TGGCGCTCGC GGTGGCCGGC
GTGCTGCTCA ACGTGGCGCT GTATTTCCAG GCCCGCGACA CGCTGGTCGA CGACACCGTC
GCCCAGGCGC GCGTGATCGC CGTCAGCTCG ACCGCCGCAC TGGTGTTCGG CGATGCGGCG
GCGGCGGCCG AAATCCTCGG CAGCCTGAGC AACGTGCGCT CGATCGACCG CGCCACGCTG
TTCGACCGCA CCGGCGCCGT GCTGTCGGAG CACCACCTGC ACGGTCCGGT GGTGCATGCC
CGGTCCGAGT CCATGCCGGT CCATGTGGCC GATTACCTGT TGCGTGACGA CTGGCTCAGC
GTGCTCGAGC CGGTCATCCA CGGTGGCGCC GCGGTCGGTC AGGTGCGCGT CGAGGTGCCG
ATGCGCCCGC TCTACCTGAA GGCGGCGGCC ACCGCCGGCG TCACCGCCTT GTGCGCGGCC
GTCGCGCTGC TGCTGGCGTA CCTGTTCGCC GTCGGCGTGC GGCGCGACGT GCGCCGCATC
GAGCGGCGCA TGCGCGACCT CGCCTATGTC GACACCGTCA CCGGCCTGTT CAACCGTAAC
GCGGCGGGCG AGCACCTGGC CGAGTCCGTG CGCGCCGGGC AGGCCGGCGG CGAAGGCTTC
TCGGTGGTGA CGATCGACAT CGACGACTTC AAGAAGATCA ACGACACGCT CGGCCATGCC
GCCGGTGACG CGCTGCTGTG CGAGGTGGCG CGGCGCCTGA CCGGCGCGCT GTCGCCGAGC
GCACGGGCCT ACCGGTTCGG CGGCGACGAG TTCGTCATCG TCTGCCCCGA CCCGAACGGT
TTTCGCGACC CCGACTGTTA TGGCCACCGG ATCGGCGAGG CGCTCGGCGG TGCCTTCCTG
CTCGACGGCC GCCTGCTGCA CCTGGGCGGC AGCGTCGGCG TGGCGCGATT CCCGATCGAC
GGCAGCAGCG CCAGCGAGGT CCTGCGAGCC TCCGACCTGG CGATGTACCG CGCCAAGGCC
AACGGCAAGA ACCAGGTGGT GGTGTTCGAC GCCCACCTGC GCGCGGCCTC CGAGCAGAGC
CTGCGCATCG AGTCCGAGCT GTGGCTGGCG CTCGAGCGCG GCGAGCTGCG GCTGTTCTAC
CAGCCGATCG TCGAGCTCGC CAGCGGCCGC ACCGTCGGCG CCGAGGCGCT GGTGCGCTGG
CAGCACCCGC AGCGCGGCCT GCTCGGCCCG GCCGACTTCA TCGACGTGGC CGAGAGCACC
GGCCTGGTCG TGCCGCTGGG CGGCTGGGTG CTGGCCGAAG CCGCCCGTCA GCTGGCGCGC
TGGGATGCCG ACGGTCTGGC GCCGATGCAG ATGGCGGTCA ACGTGTCGGC CCGCCAGCTC
GGCGGCGACG TGCTGCTGCA GCAGTACCGC AGCGCCGTCG ATGCCGCCGG CTGTGCGCCG
CAGCGCCTGG AGATCGAGCT CACCGAGCAC ACCCTGGTCG ACAACGTCGA CGTCAACCTG
CGCCTGCTCA ACCGGCTGCG CGACTGGGGC GTGTCGATCG CGATCGACGA CTTCGGCACC
GGGCTGTCGT CGCTGGCCTA CCTGAAGCAC CTGCCGGTCA ACAAGCTCAA GATCGACCGC
AGCTTCGTCG ACGGCCTGCC GGGCGATGCG GGCGACCACG CCATCGTCAG CGCCGCGGTG
TCGATGGCGC ACGCGCTGGG CATGCAGGTG GTGGCCGAAG GGGTCGAGAC GCGCGCGCAG
GCCGACGTGC TGTGCGGCCT GCATGCCAGC CTGGCGCAGG GCTGGCTGTT CGGTCGGCCG
GTCGACGCGC AGGCCTTTGC GCAGCGCCTG CGCGACCAGG ACGCGGCGCA GTCGCCGCTG
TCGATCTGCA CCGCCGCCTA G
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| Protein sequence | MNAHADCHLS PTPPPNLAPP MPVPSPKLLP SSTLDTRTSL ASRLTRLALI AAGLALAVAG
VLLNVALYFQ ARDTLVDDTV AQARVIAVSS TAALVFGDAA AAAEILGSLS NVRSIDRATL
FDRTGAVLSE HHLHGPVVHA RSESMPVHVA DYLLRDDWLS VLEPVIHGGA AVGQVRVEVP
MRPLYLKAAA TAGVTALCAA VALLLAYLFA VGVRRDVRRI ERRMRDLAYV DTVTGLFNRN
AAGEHLAESV RAGQAGGEGF SVVTIDIDDF KKINDTLGHA AGDALLCEVA RRLTGALSPS
ARAYRFGGDE FVIVCPDPNG FRDPDCYGHR IGEALGGAFL LDGRLLHLGG SVGVARFPID
GSSASEVLRA SDLAMYRAKA NGKNQVVVFD AHLRAASEQS LRIESELWLA LERGELRLFY
QPIVELASGR TVGAEALVRW QHPQRGLLGP ADFIDVAEST GLVVPLGGWV LAEAARQLAR
WDADGLAPMQ MAVNVSARQL GGDVLLQQYR SAVDAAGCAP QRLEIELTEH TLVDNVDVNL
RLLNRLRDWG VSIAIDDFGT GLSSLAYLKH LPVNKLKIDR SFVDGLPGDA GDHAIVSAAV
SMAHALGMQV VAEGVETRAQ ADVLCGLHAS LAQGWLFGRP VDAQAFAQRL RDQDAAQSPL
SICTAA
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