Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1226 |
Symbol | |
ID | 6163926 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1311999 |
End bp | 1312790 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641663980 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001790260 |
Protein GI | 171057911 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCTCG GCATTGCAGG CAGATGGGCG CTGGTGTGCG GCGCGAGCAA GGGCTTGGGC TTGGGTTGCG CGCAGGCGCT GGCCGCCGAA GGCGTCAACC TGGTGATCAC CGCCCGCAAC GAGGCCGCGC TGCAGCACAG CGCCGCCGAA TTGCGCCAGC GCCACCCGGC CGCACTGCAG GTCCGCACGG TGGTGGGCGA CATCACCACG CCCGAGGGCC GCGCCGATGC GCTGGCGGCC TGTCCGCAGG TCGACATCCT GGTCACCAAC GCCGGCGGTC CGCCGACCGG CGATTTCCGC GACTGGGACC GCGAGGCCTG GCTGCGGGCG CTCGATGCCA ACATGCTCAC GCCGATCGAG CTGATGCGCG CCACCGTCGA CGCGATGGCC GCGCGCGGCT ACGGCCGCGT CATCAACATC ACCTCGGCCG CGGTGAAGGC GCCGATCGAC ATCCTCGGCC TGTCCAACGG CGCGCGCAGC GGCCTGACCG GTTTCGTCGC CGGACTGGCG CGCCAGCCGC AGCTGGCGCA GAACGACGTC ACGATCAACA ACCTGATGCC GGGCGCTTTC GATACCGACC GGCTGCGCGC CACCTTCGAC GGCGCCGCGG CCAAGACGGG GCGCACCGTC GAGGCCTTGC GCGGGGCTCG CGCGCAGGCC ATCCCGGCAC GGCGCTTCGG CCGGCCCGAC GAGTTCGGCG CCTACTGCGC CTTCCTGTGC AGCCCGATGG CCGGCTACAT CACCGGCCAG AACCTGCTGA TCGACGGCGG CGCCTACCCC GGCACGTTCT GA
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Protein sequence | MDLGIAGRWA LVCGASKGLG LGCAQALAAE GVNLVITARN EAALQHSAAE LRQRHPAALQ VRTVVGDITT PEGRADALAA CPQVDILVTN AGGPPTGDFR DWDREAWLRA LDANMLTPIE LMRATVDAMA ARGYGRVINI TSAAVKAPID ILGLSNGARS GLTGFVAGLA RQPQLAQNDV TINNLMPGAF DTDRLRATFD GAAAKTGRTV EALRGARAQA IPARRFGRPD EFGAYCAFLC SPMAGYITGQ NLLIDGGAYP GTF
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