| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1217 |
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| Symbol | |
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| ID | 6163850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1302922 |
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| End bp | 1303725 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641663971 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001790251 |
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| Protein GI | 171057902 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 75 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGG TGCGTGCACT CGTGACCGGT GCGACCGGTG GCATCGGCCG GGCGATCTGC
CTGGCGCTGG TCGAGCAGGC GCGGCGCGAT GGCGCCGACA TCCGCATCGC CGCGGCCGCC
TCGCGCCCGG GGCCGGCGCT CGATGCGCTG GTGGCCGAGT TGACGGCGGC AGGGGCTGCG
GCCACCGGTG TCTGCGGCGA TCTCACCGAT CCCGATTCAT GCGCTGCGCT GGTGGCGCAG
GCGGGCGAGT TCTGTGGCGG GCTGACGCTG CTGGTGTCGA ACGCGGGCGC GTCGGGGCCG
GGCCGGCTGG CCGACCTGTC GGTCGAGCAG TGGGACGCGA CCTTTGCGCT CAACGTGCGT
GCGACCTGGC TGCTGGCCCG CGCGGCACGG CCGCTGCTGG CCGGTGGAGG CAGCGTGGTG
GCGATCGCGT CGATGTCGGG CCTGCACCCG CATCCGGGCT ACGGCGCCTA CTCGCCGGCC
AAGGCCGCGT TGACGATGCT GTGCCGCCAG CTGGCGCAGG AGTGGGCCGA CATGGGCATC
CGCGTCAACA CGGTCTGCCC CGGCATGATT CGCACGCCGC TGACCGAGGC GGTCTACCGG
GATGAATCGG TCAAGGCGCA GCGCGAGGTG CTGGTGCCGC TGGCGCGCAT CGGCCGGGCC
GAGGACGTGG CCGCGGCGGT GGCCTACCTG GCGAGTGCCG GGGCGTCGTA CGTGACGGGG
CAGAACCTGG TGGTCGACGG CGGCGTGGCC GATCACATGC TGGCGCTGAT CCCCGGCCGG
CCGCAGAAAG CCGCTGCCAC CTGA
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| Protein sequence | MTAVRALVTG ATGGIGRAIC LALVEQARRD GADIRIAAAA SRPGPALDAL VAELTAAGAA
ATGVCGDLTD PDSCAALVAQ AGEFCGGLTL LVSNAGASGP GRLADLSVEQ WDATFALNVR
ATWLLARAAR PLLAGGGSVV AIASMSGLHP HPGYGAYSPA KAALTMLCRQ LAQEWADMGI
RVNTVCPGMI RTPLTEAVYR DESVKAQREV LVPLARIGRA EDVAAAVAYL ASAGASYVTG
QNLVVDGGVA DHMLALIPGR PQKAAAT
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