| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1181 |
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| Symbol | |
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| ID | 6161724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1264891 |
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| End bp | 1267551 |
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| Gene Length | 2661 bp |
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| Protein Length | 886 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663935 |
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| Product | DNA mismatch repair protein MutS |
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| Protein accession | YP_001790215 |
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| Protein GI | 171057866 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
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| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.690734 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGCCC AGTACCTGCG GATCAAGCGC GAGTTCCCGG ACACGCTGGT GTTCTACCGG
ATGGGCGACT TCTACGAGGT GTTCTTCGAC GACGCCCGCC TGGCGCACCG CCTGCTCGAC
ATCACGCTGA CCACGCGCGG CCAGAGCAAC GGCGAGCCGG TGGTGATGGC GGGCGTGCCG
GTGCAGGCGC TCGAAAGCTA CCTCGCCAAG CTGATCAAGC GCGGCCAGGC GGTGGCGATC
GCCGAGCAGG TGGGCGAGGT CGGCGCCGGC AAGGGGCCGG TCGAGCGCAA GGTGGTGCGG
GTGGTCACGC CCGGCACGAT CACCGACACC GAGCTGCTGG CCGAGCGCGA GGACACCCGG
CTGCTGGCGA TCGCGCAGAC CGGCCCGGCG AGTGCGCCGC TGTATGGTCT GGCGTGGCTG
GCGCTGGCCA GCGGCCAGCT CGGCCTGAGC GAATGCAGCG AGCGCGAACT GGACGCCTGG
CTGGCGCGGC TGGCACCGGC CGAGGTGCTG GTGAGTGCCG AGATCGACAG CCAGCGCCGG
CCCGCCGCGC TGCGCGCGCT GGCCGCGCCG CTGACCGCGC GGCCGGGCTG GCAGTTCGAC
AGCGCGCTGG GCGAGCGCAA GCTGCGCGAG CAGCTGCGGG TGGCGCACCT GTCGGGCTTC
AACGCGCAGG ATCTGAGCGC CGCGCACGCC GCCGCTGCCG CGCTGCTGAG CTTTGCCGAG
CACACCCAGG GCCGTGCGCT CTCGCACGTC AACAGCCTGA CGGTCGAGCG CGCCACCGAC
CTGCTGGAGC TGCCGCCGGC CACGCACCGC AACCTCGAGC TGATCGAGAC CCTGCGCGGC
GAGACGGCGC CGACGCTGCT GTCGCTGCTC GACACCTGTC GCACCGGCAT GGGCAGCCGG
CTGCTGCGCC ACTGGCTGAC GCACCCGCTG CGCGAGCGCA CGGTGGCACG CGAGCGCCAC
GCCGCGATCG CCGCGCTGCT CGACGCCCGC GCCGCCGAGC CGCTGCGCGA GGCGCTGCGC
CACGTCAGCG ACGTGCAGCG CATCACCGCC CGCACCGCGC TGCGCCAGGT GCGCCCACGT
GAACTGGCCG GCCTGCGCGA AACCCTCGCC CACCTGCCGA CGCTGCGCGG CCAGGTGCCG
AACGGCGCGC CGCTGCTGGC CGACCTGCAC GCCGCACTCA CACCCGACGC CTCGATCGCC
GAGCTGCTGC AGCGCGCCGT GGCCGAAGAA CCGGCCGTGC TGCTGCGTGA CGGCGGGGTG
ATCGCGGCCG GCTTCGACGC CGACCTGGAC GAGCTGCGCG CCATCGCCAC CAACTGCGAC
GCCTTCCTGC TCGACCTGGA GGCGCGCGAA CGCGAGCGCA CCGGCATCGC CAACCTGCGG
GTGCAATACA ACAAGGTGCA CGGCTTCTAC ATCGAAGTCA CGCAGGGTCA GGTCGACAAG
GTGCCGCTCG ACTACCGGCG CCGCCAGACG CTCAAGAACG CCGAGCGCTA CATCACGCCC
GAGCTGAAGG CCTTCGAGGA CAAGGCGCTG TCGGCGCAGG AGCGTTCGCT GGCACGCGAG
AAGTGGCTCT ACGAGCAGCT GCTCGACGCG CTGCAGCCGC ACCTGAACGC GCTGTCCGAG
CTGGGCCGCG CACTCGCCAG CCTCGACGCG CTGGCCGCCT TTGCCGAACG CGCCGCCACG
CTCGACTGGT GCGCGCCCGA GTTCGTCAAC CACCCGTGCC TGGACATCGA ACAGGGCCGC
CACCCGGTGG TCGAGGCGCG GCTGGCGGAA ACCGGCGGCG GCAACTTCAT CGCCAACGAC
TGCCGGCTCG ATTCGGCGCG CCGCATGGTG ATCCTGACCG GCCCCAACAT GGGCGGCAAG
AGCACCTTCA TGCGCCAGGT GGCGGTGATC GCGCTGCTGG CAGCGATCGG CTCGTACGTG
CCGGCGGCGC GCGCGCGGCT CGGCCCGCTC GACGCCATCC ACACCCGCAT CGGCGCGGCC
GACGACCTGG CCAACGCGCA GTCGACCTTC ATGCTCGAGA TGACCGAGGC CAGCGCCATC
CTGCACAGCG CGAGCGAGCA CTCACTTGTC CTGATGGACG AGATCGGCCG CGGCACCAGC
ACCTTCGACG GCCTGGCGCT GGCCGGCGCG ATCGGCAGCC ACCTGCACGA CCGCAACAAG
AGCTTCACAC TGTTCGCGAC GCACTATTTC GAGCTGACCG AGTTCCCGGC CCGGCACCGG
CATGCCGTCA ACATGCACGT GTCGGCGGCA GAGAGCGGCG ACGACATCGT CTTCCTGCAT
GCGATCGAGG CCGGGCCGGC GAGCCGCAGC TACGGCGTGC AGGTGGCGCG GCTGGCCGGC
ATGCCGGGCT CGGTGCTGCG CCAGGCGCGC AACGCGCTCG ACAGCCTGGA GGCCCAGCAG
CGTGCCGGCC AAGCGCAGAT CGACCTGTTC GCCGGGCCCG ATGTCAGTCC CGAGGTCGAG
GCCGCGGCAC CCATATCGAT CGCGCTCACG CCGGTCTCGA CACCGCAGGC CACGGCGCAC
GCAGCGGTTC TCGATGCACT GGCCGACGTC GAGCCCGACA ATCTGAGCCC GCGCGAGGCC
CTGGCGGCAC TCTATCGACT CAAGGCCCTG GCGATCGCGC CGGCGGCCGA TCCATCCACC
TTCACCCCTT CACGACCATG A
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| Protein sequence | MMAQYLRIKR EFPDTLVFYR MGDFYEVFFD DARLAHRLLD ITLTTRGQSN GEPVVMAGVP
VQALESYLAK LIKRGQAVAI AEQVGEVGAG KGPVERKVVR VVTPGTITDT ELLAEREDTR
LLAIAQTGPA SAPLYGLAWL ALASGQLGLS ECSERELDAW LARLAPAEVL VSAEIDSQRR
PAALRALAAP LTARPGWQFD SALGERKLRE QLRVAHLSGF NAQDLSAAHA AAAALLSFAE
HTQGRALSHV NSLTVERATD LLELPPATHR NLELIETLRG ETAPTLLSLL DTCRTGMGSR
LLRHWLTHPL RERTVARERH AAIAALLDAR AAEPLREALR HVSDVQRITA RTALRQVRPR
ELAGLRETLA HLPTLRGQVP NGAPLLADLH AALTPDASIA ELLQRAVAEE PAVLLRDGGV
IAAGFDADLD ELRAIATNCD AFLLDLEARE RERTGIANLR VQYNKVHGFY IEVTQGQVDK
VPLDYRRRQT LKNAERYITP ELKAFEDKAL SAQERSLARE KWLYEQLLDA LQPHLNALSE
LGRALASLDA LAAFAERAAT LDWCAPEFVN HPCLDIEQGR HPVVEARLAE TGGGNFIAND
CRLDSARRMV ILTGPNMGGK STFMRQVAVI ALLAAIGSYV PAARARLGPL DAIHTRIGAA
DDLANAQSTF MLEMTEASAI LHSASEHSLV LMDEIGRGTS TFDGLALAGA IGSHLHDRNK
SFTLFATHYF ELTEFPARHR HAVNMHVSAA ESGDDIVFLH AIEAGPASRS YGVQVARLAG
MPGSVLRQAR NALDSLEAQQ RAGQAQIDLF AGPDVSPEVE AAAPISIALT PVSTPQATAH
AAVLDALADV EPDNLSPREA LAALYRLKAL AIAPAADPST FTPSRP
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