Gene Lcho_1116 details

Gene Information

• Locus tag: Lcho_1116
• ID: 6162298
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1191915
• End bp: 1192649
• Gene Length: 735 bp
• Protein Length: 244 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641663870
• Product: GntR domain-containing protein
• Protein accession: YP_001790150
• Protein GI: 171057801
• COG category: [K] Transcription
• COG ID: [COG2186] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACACCC CCACAGCCGC AGCGCGTCGC AGACCGCGCA CCCTGGCCCT TGAACTGGTC 
GATGCCCTCG GCGATCGCAT CCGCGACGGC CGTCTCGCGC AAGGCGACAA GCTGCCCACC 
GAAGCGGCCA TCATGGCCGA GTTCGCCGTC AGCCGGACGG TGGTGCGCGA GGCGATCTCC 
AAGCTGCAGG CCGCCGGCCT GGTCGAGACG CGGCACGGCA TCGGCACCTT CGTGCTGGGG 
GTGGGCGAGG CGCCGGGTTT CCGCATCGCG CCCGAGCAGT ACAACACCCT GCGCGACGTG 
ATCGCGGTGC TCGAGCTGCG CATCGGCCTC GAGACCGAAG CCGCGGCGCT GGCCGCGCAG 
CGCCGCACCG AAGCCAACAT CGTGCAGCTG CGCGCTGCGC TCGATGCGGT GGCGAAGGAC 
TTCGAGGCCG GGCGCGATTC GGTCGCCGCC GACTTCCAGT TCCACCTCGA GATCGCCCGC 
GCGACCCAGA ACAGCCACTA CACCGAGCTG ATGTCGACCC TCGGCAGCAT GATCATCCCG 
CGCGCCCGAC TGGTGCCCGA GGGCGAGCCG AGCGATGAGC ACCGGCGCTA CCTGCGCCGC 
GTCAACAGCG AGCACGAGAG CATCTTCGAC GCCATCGTCG GCCAGGACGC CGACGCCGCC 
CGCGCGGCCA TGCGCACCCA CCTGGCCAAC AGCCGCGAGC GGCGCCGGCG CGCCCAGGCC 
GACGCGCTGA GCTGA 

 

Protein sequence

MNTPTAAARR RPRTLALELV DALGDRIRDG RLAQGDKLPT EAAIMAEFAV SRTVVREAIS 
KLQAAGLVET RHGIGTFVLG VGEAPGFRIA PEQYNTLRDV IAVLELRIGL ETEAAALAAQ 
RRTEANIVQL RAALDAVAKD FEAGRDSVAA DFQFHLEIAR ATQNSHYTEL MSTLGSMIIP 
RARLVPEGEP SDEHRRYLRR VNSEHESIFD AIVGQDADAA RAAMRTHLAN SRERRRRAQA 
DALS