Gene Lcho_1097 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1097 
Symbol 
ID6160933 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1169142 
End bp1170230 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content64% 
IMG OID641663851 
ProductNMT1/THI5-like domain-containing protein 
Protein accessionYP_001790131 
Protein GI171057782 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.93236 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACCC CGTTCACTCA GATCGTTTCC GGCCAGAAAT TCAAAGGGGC CGATGTCGCC 
CGGCGTGCAC TTCTGGCGCT GGCCACCGGC CTGACCGTGA GCAGCTTCAG CCTGCCCGTG 
CAGGCACAGG AATCGGCCAT CAAGTTCCAG CTCGATTGGC GTTTCGAAGG CCCTGCGGCG 
TTGTTCCTGC TGCCGGTGAA CAAGGGCTAT TTCAAGGCCG AGAAGCTCAA TGTCACGGTG 
GACGCCGGCA ATGGCTCGGG CGGCACCGTG ACACGTGTGG CGTCGGGCAG CTACGACATG 
GGCTTTGCCG ATCTGGCCGC GCTGATGGAG TTTCACGCCA ACAACCCGAC CGCGCCGAAC 
AAGCCAGTGG CGGTGATGAT GGTCTACAAC AACACGCCCG CCGCCGTGCT GGCATTGAAG 
AAGAGCGGCA TCAGGAAGCC CGCCGACCTG GCCGGCAAGA AGATGGGCGC GCCGGTATTC 
GATGCCGGCC GCAAGGCCTG GCCCATCTTC GCCAAGGCCA ACGGCGTCAC CAACGTGACC 
TGGACCGCGA TGGACCCGCC GCTGCGCGAG ACCATGCTGG TGCGCGGCGA CATCGATGCG 
ATCACCGGCT TCTCGTTCAC TTCGCTGCTC AACCTCGAAT CGCGTGGCGT CAAGGCAGAA 
GACGTGGTGG TGTTGCCGTA CCCGCAATAC GGCGTGAAGC TCTATGGCAA CGCCATCATC 
GTGGGCGAGG AGTTCCTCAA GAAGAACCCC GAAGCCGTCA AAGGTTTTCT GCGCGCCTTC 
ACCAAGGGCA TGAAGGACGT GATCGCGGAT CCGAAGGCTT CGGTGGCGAT CGTCAAGGAG 
CGTGACGGCA TCATCAATGC CGACCTCGAA CTGCGCCGCC TGCAGCTCGC ACTCGACGCC 
ACCGTGCTGA CACCCGATGC ACGCGCCGAA GGTTTCGGCG CGATCAACGG CCCTCGCCTG 
TCGCTGATGG CGAGCCAGGT GTCCGATGCC TTCGCGACCA AGGACCGTGT CAAGGCCGAT 
GCCGTGTGGA ACGGCGCCTA CCTGCCCACG GCGGCCGAGC GCGCGATCTT CCCCGCCGTG 
AAGAAGTGA
 
Protein sequence
MSTPFTQIVS GQKFKGADVA RRALLALATG LTVSSFSLPV QAQESAIKFQ LDWRFEGPAA 
LFLLPVNKGY FKAEKLNVTV DAGNGSGGTV TRVASGSYDM GFADLAALME FHANNPTAPN 
KPVAVMMVYN NTPAAVLALK KSGIRKPADL AGKKMGAPVF DAGRKAWPIF AKANGVTNVT 
WTAMDPPLRE TMLVRGDIDA ITGFSFTSLL NLESRGVKAE DVVVLPYPQY GVKLYGNAII 
VGEEFLKKNP EAVKGFLRAF TKGMKDVIAD PKASVAIVKE RDGIINADLE LRRLQLALDA 
TVLTPDARAE GFGAINGPRL SLMASQVSDA FATKDRVKAD AVWNGAYLPT AAERAIFPAV 
KK