Gene Lcho_1090 details

Gene Information

• Locus tag: Lcho_1090
• ID: 6161517
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 1163214
• End bp: 1163885
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 641663844
• Product: hypothetical protein
• Protein accession: YP_001790124
• Protein GI: 171057775
• TIGRFAM ID: [TIGR02595] PEP-CTERM putative exosortase interaction domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 42
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAACTTC TCACTTCTTT CCGCACCACC CTCTTGGCCG CAGCCCTGGC CGTGGTCGGC 
ACGTCTGCAT TGGCTCAGAC CGAAGAACTG GCGAATCGCA ACTTCACCAA CCAGACCTTC 
CTGGCAGGCT GGGCGTCCAA CGGCGGGCTT GCAGCCGTTG ATCTCAACCC GGGCACTGCT 
GTGAACACAG CAGTCCAATT CAACTCGGGC GATGACTTCC TGCGTCAAGG CCTCGGATCC 
TTCGCAAGCG GCACCGACCT GGTGTTCTCG TTCCTGCTCG TGGACTCGTT CTACACCCCT 
AGCGCCAATG CAGCACAGGA ACTGGTTCGT TCGTCAGCGG ACATCCTTCA GTACGGCTTC 
CAGGTCAACA GTGGTGCAGG CTGGTCGTGG GTGGGTGGCG CAAGCGGAGT GATCAAAGGC 
ACCGACACTG ACATGACCAT TTATGGGGCG ACCCTGACCA CCACGTCGGC AACCGACACC 
TACCGCATCG CCTTCGACGC CTTCTCCAGC GTCAACAACG AGCGTTGGTC CGTCATCGAC 
AACACCAGCG TGACGAGCTT CGCAGCCCCG GTCCCCGAAC CCGAAACCTA CGCCATGCTG 
CTCGCAGGCC TCGGCGCCAT CGGCTTCATG TCGCGTCGCC GCCAGGGCAA GACCGTCGCA 
TCCGCTGCCT GA 

 

Protein sequence

MKLLTSFRTT LLAAALAVVG TSALAQTEEL ANRNFTNQTF LAGWASNGGL AAVDLNPGTA 
VNTAVQFNSG DDFLRQGLGS FASGTDLVFS FLLVDSFYTP SANAAQELVR SSADILQYGF 
QVNSGAGWSW VGGASGVIKG TDTDMTIYGA TLTTTSATDT YRIAFDAFSS VNNERWSVID 
NTSVTSFAAP VPEPETYAML LAGLGAIGFM SRRRQGKTVA SAA