Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1083 |
Symbol | |
ID | 6161522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1154961 |
End bp | 1155911 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641663837 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001790117 |
Protein GI | 171057768 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTGATC GCAACAACAA CGACCTGGTG CTGATCGTCG ACGACGTGCC CGACAACCTG GCGGTGCTGC ACGATGCGCT CGACGAATCC GGCTACACCG TGCTGGTGGC CACCAACGGC GCCGATGCGA TCGCGCGTGC ATCGCAGGCG CAGCCGCACA TCGTGCTGCT CGACGCGGTG ATGCCGGGCA TGGACGGCTT CGAGGTGGCG CGCCGGCTCA AGGCGCTGCC GGCCACGGCG CACATTCCGA TCGTCTTCAT GACCGGCCTG ACCGAAACCG AACACGTGCT GGCCGCCTTC GCCGCCGGCG GCTGCGACTA CGTCACCAAG CCGATCCGTG CCCGCGAGGT GCTGGCGCGC ATCGCCGCCC ACATGCACAC CGCGCGCGAG CAGCAGCTGG CGCGCAACGC GCTCGACGCC TTCGGCCATG CCAGCCTGGT GGTGCGGCTG ATCGACGGCC GCATCCTGTG GCAGACCGCG CTGGCGCGCC AGCTGCTGGC GCCCGCCGAT GCCGAGCCGG GCTGGGAGAG CCGGCGCGCG CCCACGCCGG TGCTGGCCTG GCTGCAGCGC GAGACCACCC GCCTGGCGGC GCAGCCGGTG CCGTCGAACG CCCAGGCCGC GTCGGTCGAG CTCGACGTCG GCGGGCGCCA GCTGCGCTGC ACGTTGCAGG AATCGACCGG CGACGGCGAG TGGCTGGTGG TGCTGCGCCA GGCCGACGAC GCCGCCACGC TCGAGGCCCT GGTGCTGGCC TTCCGCCTGA CCCCACGCGA GGCCGAGGTG CTGTACTGGC TGGCCAAGGG CAAGACCAAC CGCGACATCG GCGAGATCCT CGGATCGAGC GCCGCCACGG TGAAGAAGCA CCTCGAACAC GTCTACGAGA AGCTGGGCGT CGAGACCCGC AACGCGGCGG CGGCGGTGGC GATCGGCAAG GTGGCGCAGC TGGGGCGATG A
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Protein sequence | MLDRNNNDLV LIVDDVPDNL AVLHDALDES GYTVLVATNG ADAIARASQA QPHIVLLDAV MPGMDGFEVA RRLKALPATA HIPIVFMTGL TETEHVLAAF AAGGCDYVTK PIRAREVLAR IAAHMHTARE QQLARNALDA FGHASLVVRL IDGRILWQTA LARQLLAPAD AEPGWESRRA PTPVLAWLQR ETTRLAAQPV PSNAQAASVE LDVGGRQLRC TLQESTGDGE WLVVLRQADD AATLEALVLA FRLTPREAEV LYWLAKGKTN RDIGEILGSS AATVKKHLEH VYEKLGVETR NAAAAVAIGK VAQLGR
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