| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1069 |
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| Symbol | |
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| ID | 6162567 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1139914 |
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| End bp | 1141179 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663823 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001790103 |
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| Protein GI | 171057754 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGACAC CCGCCCCCAC CCCTGAGGCC GAAGCGGCCG ACACCTCGTT CGCCGCGCTG
CTGCGCATCC GGCCCTACCG GATGTTCTGG TTCACGCGCC TGACCACCCA GCTCGCCAAC
CAGATGATGA TGGTGGCGCT GGGCTGGCAG ATGTACGACC TGACCGGCAG CGCCTGGGAT
CTCGGCCTGG TCGGGCTGGC GCAGTTTCTG CCGGCCCTGC TGCTGACGCT GCCGGCCGGC
CACATGGCCG ACCGCCTGCA CCGTGCGCGC ATCCTGCAGG CCACCACGCT GGCGCAGGGG
CTGGTGGCGC TGATGCTGGT GCTGGCCAGC CACGATCTGT GGATCAACCG CGAGCTGATC
CTGCTGCTGT CGGTGGCGCT GGGCGTGGCC AAGGCCTTCC AGATGCCGGC CAGCCAGGCG
CTGCCGGCGC TGCTCGTGCC GGGCGCGCTG CTGGCGCGGG CGGTGGCGGT GAGTTCGAGC
GGCATGCAGC TGGCGATCAT TGCCGGCCCG GCCATCGGCG GCCTGCTCTA CACCGCCGGC
GCGGCGGTGG TCTACGCGCT GTGCGGCGCG CTGTTCATCA CCGGCAGCGG GCTGGCGATC
GGCATCCGCC ACGCCGACCC GGTCGCCTCC ACCGAGGCCC GCAGCTGGGC CAGCGTGTTC
GCGGGCGTGC ACTACCTGCG CGGCCAGCCG GTGCTGCTGG GCGCGATCTC GCTCGACCTG
TTCGCGGTGC TGCTGGGTGG AGCCACCGCG CTGCTGCCGA TGTTCGCGAA AGACATCCTG
CACACCGGCC CCTGGGGCCT GGGCCTGCTG CGCGCCGCAC CCGCCGCGGG CGCGCTGCTG
ATGTCGGCCT GGCTGTCGAG CCGCCCGGCG ATGCAGCACG CCGGGCGCTG GCTGATCGGC
TCGGTGGCGA TCTTCGGCGT CTGCATGCTG GTGTTCGGGC TGTCGACCTC GCTGTGGCTG
TCGATCGCCG CGCTCGCGCT CTCGGGCGCA GTCGACATGG TCAGCGTGGT GATCCGACAG
ACCCTGGTGC AGCTCGAAAC CCCCGACGCG ATGCGCGGCC GGGTCAGCGC GGTCAATTCG
GTGTTCATCG GCGCGAGCAA CCAGCTAGGC GAGTTCGAGT CGGGCGCCAC CGCGGCGCTG
CTCGGGCCGG TCGGCTCGGT GGTGCTGGGC GGCGTGGGCG TGCTGCTGGT GGCGGGGCTG
TGGGTGAAGA TCTTCCCGGC GCTGTGGCGG CGGGGCGCGC TGCTGCCACC CGGTCACGAT
CGCTGA
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| Protein sequence | MTTPAPTPEA EAADTSFAAL LRIRPYRMFW FTRLTTQLAN QMMMVALGWQ MYDLTGSAWD
LGLVGLAQFL PALLLTLPAG HMADRLHRAR ILQATTLAQG LVALMLVLAS HDLWINRELI
LLLSVALGVA KAFQMPASQA LPALLVPGAL LARAVAVSSS GMQLAIIAGP AIGGLLYTAG
AAVVYALCGA LFITGSGLAI GIRHADPVAS TEARSWASVF AGVHYLRGQP VLLGAISLDL
FAVLLGGATA LLPMFAKDIL HTGPWGLGLL RAAPAAGALL MSAWLSSRPA MQHAGRWLIG
SVAIFGVCML VFGLSTSLWL SIAALALSGA VDMVSVVIRQ TLVQLETPDA MRGRVSAVNS
VFIGASNQLG EFESGATAAL LGPVGSVVLG GVGVLLVAGL WVKIFPALWR RGALLPPGHD
R
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