Gene Lcho_1024 details

Gene Information

• Locus tag: Lcho_1024
• ID: 6159707
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1093753
• End bp: 1094214
• Gene Length: 462 bp
• Protein Length: 153 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641663774
• Product: flagellar motor switch protein FliN
• Protein accession: YP_001790060
• Protein GI: 171057711
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1886] Flagellar motor switch/type III secretory pathway protein
• TIGRFAM ID: [TIGR02480] flagellar motor switch protein FliN

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 56
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGGCTG ACAACACCGC CGCGGACCTG ACCTCGGAAC AGGACGCGAT GGCGGCCGAA 
TGGGCCGCCG CTCTGGAAGA GCAGACCCAG CACCCCGGCG GCGCGATGGC CGAGGTGCTG 
CCGTCGCCCG ACCACGGCGC GCCGGCCGCG TTCGCCAATT TCACCAGCAG CGCCGGCAGC 
GTCAACCAGC CGGGCAACGA CATCAACCTG ATCCTGGACA TCCCGGTCCA GCTGACGGTC 
GAGCTGGGCC GCACGCGCAT CCCGATCAAG AACATCCTGC AGCTGGCGCA GGGTTCGGTG 
GTCGAGCTCG ACGCGCTGGC CGGCGAGCCG ATGGACGTGC TGGTCAACGG CTACCTGATC 
GCCCAGGGCG AGGTGGTGGT GGTCAACGAC AAGTTCGGCA TCCGGTTGAC CGACATCGTG 
ACGCCGAGCG AGCGCATGCG CCGGCTGTCG CGCGGCAATT GA 

 

Protein sequence

MPADNTAADL TSEQDAMAAE WAAALEEQTQ HPGGAMAEVL PSPDHGAPAA FANFTSSAGS 
VNQPGNDINL ILDIPVQLTV ELGRTRIPIK NILQLAQGSV VELDALAGEP MDVLVNGYLI 
AQGEVVVVND KFGIRLTDIV TPSERMRRLS RGN