Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0967 |
Symbol | |
ID | 6161476 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1033191 |
End bp | 1034345 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641663718 |
Product | tetratricopeptide repeat protein |
Protein accession | YP_001790004 |
Protein GI | 171057655 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 72 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTTTG ACCTGCAATG GCTGCTGCTG GGCCTGCCGG TGGCGTTCGC GCTCGGCTGG CTGGGCTCGC GCCTCGACCT GCGCCACCTC AGGCGCGAAA CCGAATCCTC GCCGCGGGCC TATTTCAAGG GCCTGAACCT GCTGCTCAAT GAACAGCAGG ACAAGGCCAT CGATGCCTTC ATCGAGGCGG TGCAGCAAGA CCCGGGCAGC ACCGACCTGC ACTTCGCGCT CGGCAACCTG TTCCGTCGCC GCGGTGAATA CGAACGCGCC GTGCGGGTCC ACCAGCACCT GCTGGCACGC GCCGATCTGC CCACCAGCGA GCGCGACCGC GCCCAGCATG CCCTCGCCCA GGATTACCTG AAAGCCGGCC TGTTCGACCG TGCCGAGGCG GCCTACAAGG CGCTCGAAGG GACGGCCTTC GCCACCGATG CGCGGCTGGC GTTGCTGACC TTGCACGAGT CCGCGCGGGA CTGGAAATCG GCCATCGAAG TGGCCCGCGG GCTCGAGGCC ACCGCTGCCG GCAGCTTTGC CCAGCGCATC GCCCACTACT GGTGCGAGCT GTGTCTGGAG GCCGATGCGG CGGGTGACGG CGCCGCCGCC GACGCCGCGC TGACCAAGGC GCGCGAAGTG GCCCCGCAGT CGGCACGGCC GCTGATCCTG TCGGGCCAGC GCCTGGCGCG TGCGGGCCGG CACACCGAGG CCCTGGGCCT GTGGACCGCG CTGTCGACCG TGCACCCGGA AGCCTTTTCA GTCATCGCCG GTGACTATGC CGCCAGCGCC CAGGTCTGCC AGCGTGCCGA CGAGGCGCTG GTCCGGCTCA AGGCCCTGCA TCTGGCGGCG CCCTCTGCCG ACCTGCTGCT GGCTGCGCTG AGCCTGGAGT CCGACGCCGC GGCGCGGCGC CGGATGCTGG TGCAGCACCT CAAGGAAAAT CAGAGCCTGA GCGCCGCACT CAAGCTGTTG CAGGACCCGG CCGCCGCGCC GGACGACGAT GGCGGCGAAA GCCTGGCCAT GCAGCAGGCC GTCGGCAAGG CCTTGCGCCC CTTGCGCCGC TACCACTGCG CGGCTTGCGG TTTCGAGGCA CAGAACTACT TCTGGCAATG CCCCGGCTGC CACGGCTGGG ACACCTATCC GCCGCGTCGA CTCGAGGACA TGTAG
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Protein sequence | MDFDLQWLLL GLPVAFALGW LGSRLDLRHL RRETESSPRA YFKGLNLLLN EQQDKAIDAF IEAVQQDPGS TDLHFALGNL FRRRGEYERA VRVHQHLLAR ADLPTSERDR AQHALAQDYL KAGLFDRAEA AYKALEGTAF ATDARLALLT LHESARDWKS AIEVARGLEA TAAGSFAQRI AHYWCELCLE ADAAGDGAAA DAALTKAREV APQSARPLIL SGQRLARAGR HTEALGLWTA LSTVHPEAFS VIAGDYAASA QVCQRADEAL VRLKALHLAA PSADLLLAAL SLESDAAARR RMLVQHLKEN QSLSAALKLL QDPAAAPDDD GGESLAMQQA VGKALRPLRR YHCAACGFEA QNYFWQCPGC HGWDTYPPRR LEDM
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