Gene Lcho_0918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0918 
Symbol 
ID6159899 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp983204 
End bp983833 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content70% 
IMG OID641663668 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_001789955 
Protein GI171057606 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones92 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTGT CTGTCTGGCT CGCCTTCTTT GCCGCCTCCT GGGCCATCAG CCTGTCGCCC 
GGTGCGGGCG CGATCGCGGC GATGAGCGCG GGGCTCAACC ACGGCTTTGC GCGCGGCTAC 
TTCACCACCT TCGGGCTGGT GCTGGGCATC TGGACGCAGG TGCTGGTGGT CGGGCTCGGG 
CTGGGCGCGC TGATCGCCAC CTCGAGCCAC GCCTTCACCG CCGTCAAGTG GCTGGGCGTG 
TTCTACCTGA TCTATCTGGG CGTCAAGCAG TGGCGCGCCC CGGCCGTGCC GATGGTGGCA 
GCCGACGCCC CGGGCCGCAC CGAAACCCGT CGCGCGATGG TGCTGCGCGG CTGGCTGGTC 
AACACCTCGA ACCCGAAGGG CACGGTGTTC CTGCTGGCGG TGGTGCCGCA GTTCCTCGAC 
ATGCACCAGG CGCTCGGGCC GCAGTACCTG GTGATCGCCG CGACGCTCGG TTTCACCGAC 
CTGGTGGTGA TGGCCGGCTA CACCGTGCTG GCGGCGCGGC TGCTGCGGCT GCTGCGCACG 
CCACGCCAGA TCACCTGGCT GAACCGCGGT TTCGGCTCGC TGTTCGTGAC CGTCGGGCTG 
CTGCTGGCGA CCTTCAAGCG CGCCGCCTGA
 
Protein sequence
MDLSVWLAFF AASWAISLSP GAGAIAAMSA GLNHGFARGY FTTFGLVLGI WTQVLVVGLG 
LGALIATSSH AFTAVKWLGV FYLIYLGVKQ WRAPAVPMVA ADAPGRTETR RAMVLRGWLV 
NTSNPKGTVF LLAVVPQFLD MHQALGPQYL VIAATLGFTD LVVMAGYTVL AARLLRLLRT 
PRQITWLNRG FGSLFVTVGL LLATFKRAA